Release pyhops snapshot @ 10beb3f4 (v1.7.0)

Imported from MesoscienceLab/pyhops master at commit 10beb3f4 via the
release_to_mesohops.py tool. Identifier renames (pyhops -> mesohops) and
display-string renames (PyHOPS -> MesoHOPS) applied during import; private
files (README.md, LICENSE, .gitignore) preserved from mesohops master.

Highlights of v1.7.0 (vs. mesohops 1.6.0):

Build stability:
- pyproject.toml: pin all dependency ranges. numba and numpy pinned tight
  (numba >=0.63,<0.64; numpy >=2.3,<2.4) to guard against a history of
  stochastic test failures and memory issues that tracked numba minor bumps;
  numba binds against a specific numpy ABI per release. Other deps loose-
  pinned at the major.
- pyproject.toml: tighten requires-python to >=3.12,<3.14 (matches what CI
  validates and what the numba pin allows).
- pyproject.toml: replace malformed "Development Status :: full release
  1.6.0" classifier with the standard trove classifier.
- .github/workflows/coverage.yml: matrix CI on Python 3.12 + 3.13 and add
  a gating clean-install smoke job that runs `pip install .` (non-editable)
  + level-1 tests; catches packaging bugs the editable-install coverage
  job hides.

Cleanup:
- src/mesohops/noise/hops_noise.py: fix __title__ casing typo.
- tests/test_git_utils.py: skip test_get_git_commit_hash_success when the
  installed package is not inside a git working tree (the function returns
  the git error message string in that case, by design).
- Remove two orphan test fixtures (pyhops_testing_noise{,_v0}.npy) that
  were never referenced by any test.

Test results on the imported snapshot: level-2 suite passes 319/319 in a
fresh venv with the pinned dep ranges resolving cleanly.

Author: alexiahartzell

.coverage

@@ -0,0 +1,30 @@
+[run]
+source = mesohops
+relative_files = true
+omit =
+    */tests/*
+    */test_*
+    setup.py
+    */venv/*
+    */virtualenv/*
+    */site-packages/*
+    */timing/timing_analysis.py
+    */timing/helper_functions/*
+    */timing/timing_models/*
+    */timing/__init__.py
+
+[report]
+exclude_lines =
+    pragma: no cover
+    def __repr__
+    if self.debug:
+    if settings.DEBUG
+    raise AssertionError
+    raise NotImplementedError
+    if 0:
+    if __name__ == .__main__.:
+    class .*\bProtocol\):
+    @(abc\.)?abstractmethod
+
+[html]
+directory = htmlcov

.coveragerc

@@ -0,0 +1,106 @@
+name: Code Coverage
+
+on:
+  pull_request:
+    branches: [ main, master ]
+
+permissions:
+  contents: read
+  pull-requests: write
+  checks: write  # Needed for test reporting
+
+jobs:
+  coverage:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ['3.12', '3.13']
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v4
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install dependencies (editable)
+      run: |
+        python -m pip install --upgrade pip
+        pip install -e .
+
+    - name: Run tests with coverage
+      continue-on-error: true
+      run: |
+        # Run tests and generate both coverage and test report
+        pytest --cov=mesohops --cov-report=xml --cov-report=term --junitxml=test-results.xml -v || true
+
+        # Show test results summary
+        echo "=== Test Results Summary ==="
+        if [ -f test-results.xml ]; then
+          echo "Test results file generated"
+          # Count total tests
+          total_tests=$(grep -c "<testcase" test-results.xml)
+          # Count failed tests
+          failed_tests=$(grep -c "<failure" test-results.xml)
+          echo "Total tests: $total_tests"
+          echo "Failed tests: $failed_tests"
+          echo "Passed tests: $((total_tests - failed_tests))"
+        else
+          echo "No test results file generated"
+        fi
+
+    - name: Upload coverage to Codecov
+      if: matrix.python-version == '3.12'
+      uses: codecov/codecov-action@v3
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
+        file: ./coverage.xml
+        flags: unittests
+        name: Python Coverage
+        fail_ci_if_error: false
+        verbose: true
+
+    - name: Publish Test Results
+      if: always()
+      uses: mikepenz/action-junit-report@v4
+      with:
+        report_paths: 'test-results.xml'
+        check_name: 'Python Unit Tests (${{ matrix.python-version }})'
+        fail_on_failure: false
+        require_tests: false
+
+  smoke-install:
+    # Validates that `pip install .` (non-editable) succeeds and that the
+    # installed package can run the test suite. Catches packaging bugs the
+    # editable-install coverage job hides — missing files in the wheel,
+    # broken pyproject.toml metadata, dependency-resolution failures.
+    # Gating: a failed clean install must block the PR.
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ['3.12', '3.13']
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v4
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Clean install (non-editable)
+      run: |
+        python -m pip install --upgrade pip
+        pip install .
+
+    - name: Run level-1 tests against installed package
+      run: |
+        # Override pytest.ini's addopts to disable coverage measurement here.
+        # Coverage is the editable-install job's responsibility; in the smoke
+        # job, the installed-package paths can't be reconciled with the
+        # `source = mesohops` setting in .coveragerc, so --cov-fail-under=70
+        # would always trip on a 0% reading.
+        pytest tests/ --level 1 -v -o addopts=""

.github/workflows/coverage.yml

@@ -0,0 +1,25 @@
+comment:
+  layout: "diff, flags, files"  # Shows coverage diff, flags, and file list
+  behavior: default
+  require_changes: false  # Always post comment, even if no coverage changes
+  require_base: false    # Don't require base report
+  require_head: true     # Require head report
+  hide_project_coverage: false  # Show project coverage
+
+coverage:
+  status:
+    project:
+      default:
+        target: auto  # Compare to previous base commit
+        threshold: 0%  # No threshold requirement
+        informational: true  # Don't block PRs
+    patch:
+      default:
+        target: auto
+        threshold: 0%
+        informational: true  # Don't block PRs
+
+codecov:
+  require_ci_to_pass: false  # Show coverage even if CI fails
+  notify:
+    wait_for_ci: false  # Send notifications immediately