Code cleanup #167
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| if: "! contains(toJSON(github.event.commits.*.message), '[skip-check]')" | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| # - name: Query dependencies | |
| # run: | | |
| # install.packages('remotes') | |
| # saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| # writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| # shell: Rscript {0} | |
| # | |
| # - name: Cache R packages | |
| # if: runner.os != 'Windows' | |
| # uses: actions/cache@v1 | |
| # with: | |
| # path: ${{ env.R_LIBS_USER }} | |
| # key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| # restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install JAGS macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install jags | |
| - name: Download JAGS Windows | |
| if: runner.os == 'Windows' | |
| run: (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe') | |
| shell: powershell | |
| - name: Install JAGS Windows | |
| if: runner.os == 'Windows' | |
| run: C:\JAGS-4.3.1.exe /S | |
| shell: cmd | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")') | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Install rjags | |
| run: Rscript -e 'install.packages("rjags", type = "source")' | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| # - name: Install dependencies | |
| # run: | | |
| # remotes::install_deps(dependencies = TRUE) | |
| # remotes::install_cran("rcmdcheck") | |
| # shell: Rscript {0} | |
| # - name: Session info | |
| # run: | | |
| # options(width = 100) | |
| # pkgs <- installed.packages()[, "Package"] | |
| # sessioninfo::session_info(pkgs, include_base = TRUE) | |
| # shell: Rscript {0} | |
| # - name: Check | |
| # env: | |
| # _R_CHECK_CRAN_INCOMING_: false | |
| # _R_CHECK_FORCE_SUGGESTS_: false | |
| # _R_CHECK_SYSTEM_CLOCK_: false | |
| # IS_CHECK: true | |
| # run: | | |
| # os = .Platform$OS.type | |
| # if (os == "windows" & R.version$major == 3) {remotes::install_version("rjags", version = "4-10")} | |
| # jagshome = if (os == "windows") {readRegistry("SOFTWARE\\JAGS", maxdepth = 2, view = "32-bit")} | |
| # if (os == "windows"){Sys.setenv(JAGS_HOME = try(jagshome[["JAGS-4.3.0"]][["InstallDir"]]))} | |
| # rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), build_args = "--no-manual", error_on = "warning", check_dir = "check") | |
| # shell: Rscript {0} | |
| # - name: Show testthat output | |
| # if: always() | |
| # run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| # shell: bash | |
| # | |
| # - name: Upload check results | |
| # if: failure() | |
| # uses: actions/upload-artifact@main | |
| # with: | |
| # name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| # path: check |