Merge pull request #22 from NErler/code-cleanup

Code cleanup

Author: NErler

.Rbuildignore

@@ -50,3 +50,5 @@ sim_mldata.R
 
 revdep/
 ^CRAN-SUBMISSION$
+^\.vscode$
+^[.]?air[.]toml$

.gitignore

@@ -16,3 +16,4 @@ bash.exe.stackdump
 sh.exe.stackdump
 
 revdep
+.DS_Store

.lintr

@@ -0,0 +1,2 @@
+linters: linters_with_defaults() # see vignette("lintr")
+encoding: "UTF-8"

.vscode/extensions.json

@@ -0,0 +1,5 @@
+{
+    "recommendations": [
+        "Posit.air-vscode"
+    ]
+}

.vscode/settings.json

@@ -0,0 +1,10 @@
+{
+    "[r]": {
+        "editor.formatOnSave": true,
+        "editor.defaultFormatter": "Posit.air-vscode"
+    },
+    "[quarto]": {
+        "editor.formatOnSave": true,
+        "editor.defaultFormatter": "quarto.quarto"
+    }
+}

DESCRIPTION

@@ -17,7 +17,7 @@ URL: https://nerler.github.io/JointAI/
 License: GPL (>= 2)
 BugReports: https://github.com/nerler/JointAI/issues/
 LazyData: TRUE
-RoxygenNote: 7.3.2
+RoxygenNote: 7.3.3
 Roxygen: list(old_usage = TRUE, markdown = TRUE)
 Imports: rjags, mcmcse, coda, rlang, future, mathjaxr, survival, MASS
 SystemRequirements: JAGS (https://mcmc-jags.sourceforge.io/)

NEWS.md

@@ -8,7 +8,11 @@
 * `all_vars()`: update of the function; can now handle an unspecified number of
   input objects and can extract variable names from formulas and character 
   strings that are valid variable names
-
+* objects provided to the `data` argument are now converted with
+  `as.data.frame()`, making it possible to provide a `tibble`
+* Elements of a list supplied to the `append_data_list` argument will now
+  overwrite existing elements of the `data_list` with the same name. This
+  enables a wider range of changes to the automatically generated JAGS model.
 
 --------------------------------------------------------------------------------