trying gpu tests with common image

Signed-off-by: Peter St. John <pstjohn@nvidia.com>

Author: pstjohn

.github/workflows/bionemo-recipes.yml

@@ -44,8 +44,9 @@ jobs:
             recipes/**
 
       - id: set-dirs
+        # TODO: add models to the list of dirs
         run: |
-          DIRS=$(ls -d recipes/*/ models/*/ | jq -R -s -c 'split("\n")[:-1]')
+          DIRS=$(ls -d recipes/*/ | jq -R -s -c 'split("\n")[:-1]')
           echo "dirs=$DIRS" >> $GITHUB_OUTPUT
       - name: Show output
         run: |
@@ -55,13 +56,31 @@ jobs:
 
   per-folder-test:
     needs: changed-dirs
-    runs-on: ubuntu-latest
+    runs-on: linux-amd64-gpu-l4-latest-1
+    container:
+      image: nvcr.io/nvidia/pytorch:25.06-py3
     strategy:
       matrix:
         dir: ${{ fromJson(needs.changed-dirs.outputs.dirs) }}
 
     steps:
-      - name: Run tests
+      - name: Checkout repository
         if: contains(needs.changed-dirs.outputs.all_changed_files, matrix.dir)
-        run: |
-          echo "Running tests for ${{ matrix.dir }}"
+        uses: actions/checkout@v4
+        with:
+          sparse-checkout: '${{ matrix.dir }}'
+          sparse-checkout-cone-mode: false
+
+      - run: |
+          shopt -s dotglob
+          mv ${matrix.dir}/* .
+          rm -rf ${matrix.dir}
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v6
+
+      - name: Install dependencies
+        run: uv pip install -r requirements.txt
+
+      - name: Run tests
+        run: pytest -v .