add doi in citation file

Author: ernestguevarra

.github/workflows/mirror-codeberg.yaml

@@ -14,6 +14,6 @@ jobs:
           fetch-depth: 0
       - uses: yesolutions/mirror-action@master
         with:
-          REMOTE: https://codeberg.org/OxfordIHTM/aurora
+          REMOTE: https://codeberg.org/oxford-ihealth/aurora
           GIT_USERNAME: ${{ secrets.CODEBERG_USERNAME }}
           GIT_PASSWORD: ${{ secrets.CODEBERG_TOKEN }}

CITATION.cff

@@ -9,6 +9,7 @@ type: software
 license: GPL-3.0-or-later
 title: 'aurora: Interface to the Oxford University Research Archive'
 version: 0.0.0.9000
+doi: 10.5281/zenodo.18452028
 identifiers:
 - type: url
   value: http://oxford-ihtm.io/aurora/
@@ -33,6 +34,7 @@ preferred-citation:
   year: '2024'
   notes: R package version 0.0.9000
   url: https://oxford-ihtm.io/aurora/
+  doi: 10.5281/zenodo.18452028
 repository-code: https://github.com/OxfordIHTM/aurora
 url: https://oxford-ihtm.io/aurora/
 contact:
@@ -47,6 +49,17 @@ keywords:
 - r
 - rstats
 references:
+- type: software
+  title: 'R: A Language and Environment for Statistical Computing'
+  notes: Depends
+  url: https://www.R-project.org/
+  authors:
+  - name: R Core Team
+  institution:
+    name: R Foundation for Statistical Computing
+    address: Vienna, Austria
+  year: '2026'
+  version: '>= 4.1.0'
 - type: software
   title: dplyr
   abstract: 'dplyr: A Grammar of Data Manipulation'

README.Rmd

@@ -22,7 +22,7 @@ knitr::opts_chunk$set(
 [![test-coverage](https://github.com/OxfordIHTM/aurora/actions/workflows/test-coverage.yaml/badge.svg)](https://github.com/OxfordIHTM/aurora/actions/workflows/test-coverage.yaml)
 [![Codecov test coverage](https://codecov.io/gh/OxfordIHTM/aurora/graph/badge.svg)](https://app.codecov.io/gh/OxfordIHTM/aurora)
 [![CodeFactor](https://www.codefactor.io/repository/github/oxfordihtm/aurora/badge)](https://www.codefactor.io/repository/github/oxfordihtm/aurora)
-[![DOI](https://zenodo.org/badge/741887517.svg)](https://zenodo.org/badge/latestdoi/741887517)
+[![DOI](https://zenodo.org/badge/741887517.svg)](https://doi.org/10.5281/zenodo.18452028)
 <!-- badges: end -->
 
 The [Oxford University Research Archive (ORA)](https://ora.ox.ac.uk/) is an Open Access platform and is the institutional repository for the [University of Oxford](https://ox.ac.uk). ORA serves as a permanent and secure online archive of research materials produced by members of the University of Oxford. ORA supports and participates in the Open Archives Initiative (OAI). ORA is a registered OAI-PMH data-provider and provides metadata for all public records which is updated as soon as each record is published or updated. ORA also provides API access to its resources. This package provides low level functions to interface with the [ORA API](https://ora.ox.ac.uk/api).

README.md

@@ -15,7 +15,7 @@ experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](h
 [![Codecov test
 coverage](https://codecov.io/gh/OxfordIHTM/aurora/graph/badge.svg)](https://app.codecov.io/gh/OxfordIHTM/aurora)
 [![CodeFactor](https://www.codefactor.io/repository/github/oxfordihtm/aurora/badge)](https://www.codefactor.io/repository/github/oxfordihtm/aurora)
-[![DOI](https://zenodo.org/badge/741887517.svg)](https://zenodo.org/badge/latestdoi/741887517)
+[![DOI](https://zenodo.org/badge/741887517.svg)](https://doi.org/10.5281/zenodo.18452028)
 <!-- badges: end -->
 
 The [Oxford University Research Archive (ORA)](https://ora.ox.ac.uk/) is
@@ -83,8 +83,9 @@ citation("aurora")
 #> To cite aurora in publications use:
 #> 
 #>   Ernest Guevarra (2024). _aurora: Interface to the Oxford University
-#>   Research Archive (ORA) API_. R package version 0.0.9000,
-#>   <https://oxford-ihtm.io/aurora/>.
+#>   Research Archive (ORA) API_. doi:10.5281/zenodo.18452028
+#>   <https://doi.org/10.5281/zenodo.18452028>, R package version
+#>   0.0.9000, <https://oxford-ihtm.io/aurora/>.
 #> 
 #> A BibTeX entry for LaTeX users is
 #> 
@@ -94,6 +95,7 @@ citation("aurora")
 #>     year = {2024},
 #>     note = {R package version 0.0.9000},
 #>     url = {https://oxford-ihtm.io/aurora/},
+#>     doi = {10.5281/zenodo.18452028},
 #>   }
 ```
 

inst/CITATION

@@ -5,5 +5,6 @@ bibentry(
   author  = person("Ernest Guevarra"),
   year    = "2024",
   note    = "R package version 0.0.9000",
-  url     = "https://oxford-ihtm.io/aurora/"
+  url     = "https://oxford-ihtm.io/aurora/",
+  doi     = "10.5281/zenodo.18452028"
 )