Error on for tidy_jjm

[jimianelli]

m0 <- readJJM("h1_0.00", path = "config", input = "input")
m1 <- readJJM("h1_1.00", path = "config", input = "input")
tidy_mods <- tidy_JJM(combineModels(m0,m1))
totals <- get_totals(tidy_mods)
Warning messages:
1: Unknown or uninitialised column: output.
2: Unknown or uninitialised column: output.
3: Unknown or uninitialised column: output.
and then from:
totals %>%

• ggplot(aes(year, value, color = stock, linetype = model)) +
• geom_line() +
• facet_wrap(~ metric, scales = "free_y")
  I get:
  Error in combine_vars():
  ! At least one layer must contain all faceting variables: metric.

• Plot is missing metric
• Layer 1 is missing metric
  I get the same errors w/ get_recruits, also for single models vs combined models

[DanOvando]

Huh strange. I’m on vacation sans computer until the 23rd , tested it all on my computers before leaving, maybe I was missing an update to the JJM model? Is there a column called metric in totals?

On Thu, Jul 14, 2022 at 3:22 PM Jim Ianelli ***@***.***> wrote: m0 <- readJJM("h1_0.00", path = "config", input = "input") m1 <- readJJM("h1_1.00", path = "config", input = "input") tidy_mods <- tidy_JJM(combineModels(m0,m1)) totals <- get_totals(tidy_mods) Warning messages: 1: Unknown or uninitialised column: output. 2: Unknown or uninitialised column: output. 3: Unknown or uninitialised column: output. and then from: totals %>% - ggplot(aes(year, value, color = stock, linetype = model)) + - geom_line() + - facet_wrap(~ metric, scales = "free_y") I get: Error in combine_vars(): ! At least one layer must contain all faceting variables: metric. - Plot is missing metric - Layer 1 is missing metric I get the same errors w/ get_recruits, also for single models vs combined models — Reply to this email directly, view it on GitHub <#12>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AB5YTNYZKRPMF7LXAZUUEE3VUBZJ7ANCNFSM53TOIN3A> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

-- *Dan Ovando, Ph.D. *| He/Him Research Scientist - Hilborn Lab School of Aquatic and Fishery Sciences University of Washington www.danovando.com <https://www.weirdfishes.blog/>

[DanOvando]

Could try installing from danovando/jjmr in case something got messed up that I missed when merging back to sprfmo ?

On Fri, Jul 15, 2022 at 10:48 AM Dan Ovando ***@***.***> wrote: Huh strange. I’m on vacation sans computer until the 23rd , tested it all on my computers before leaving, maybe I was missing an update to the JJM model? Is there a column called metric in totals? On Thu, Jul 14, 2022 at 3:22 PM Jim Ianelli ***@***.***> wrote: > m0 <- readJJM("h1_0.00", path = "config", input = "input") > m1 <- readJJM("h1_1.00", path = "config", input = "input") > tidy_mods <- tidy_JJM(combineModels(m0,m1)) > totals <- get_totals(tidy_mods) > Warning messages: > 1: Unknown or uninitialised column: output. > 2: Unknown or uninitialised column: output. > 3: Unknown or uninitialised column: output. > and then from: > totals %>% > > - ggplot(aes(year, value, color = stock, linetype = model)) + > - geom_line() + > - facet_wrap(~ metric, scales = "free_y") > I get: > Error in combine_vars(): > ! At least one layer must contain all faceting variables: metric. > > > - Plot is missing metric > - Layer 1 is missing metric > I get the same errors w/ get_recruits, also for single models vs > combined models > > — > Reply to this email directly, view it on GitHub > <#12>, or unsubscribe > <https://github.com/notifications/unsubscribe-auth/AB5YTNYZKRPMF7LXAZUUEE3VUBZJ7ANCNFSM53TOIN3A> > . > You are receiving this because you are subscribed to this thread.Message > ID: ***@***.***> > -- *Dan Ovando, Ph.D. *| He/Him Research Scientist - Hilborn Lab School of Aquatic and Fishery Sciences University of Washington www.danovando.com <https://www.weirdfishes.blog/>

-- *Dan Ovando, Ph.D. *| He/Him Research Scientist - Hilborn Lab School of Aquatic and Fishery Sciences University of Washington www.danovando.com <https://www.weirdfishes.blog/>