RawHash2/.gitignore at main · STORMgroup/RawHash2 · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
bin/

test/data/d1_*
test/data/d2_*
test/data/d3_*
test/data/d4_*
test/data/d5_*
test/data/d6_*
test/data/d7_*
test/data/d8_*
test/data/d9_*
test/data/d10_*
test/data/*/*.fa
test/data/*/*.fasta
test/data/*/*.tar
test/data/*/*.tar.gz
test/data/*/fast5_files
test/data/*/pod5_files
test/data/*/slow5_files
test/data/*/dorado-*/
test/data/*/slurm-*
test/data/Chlamydomonas*

/test/data/random_community/1_symbolic_links.sh

*/*.paf
test/evaluation/*/*/slurm*.out
test/evaluation/*/*/*.paf
test/evaluation/*/*/rawhash
test/evaluation/*/*/rawhash2
test/evaluation/*/*/uncalled
test/evaluation/*/*/*.abundance
test/evaluation/*/*/*/slurm*.out
test/evaluation/*/*/*/*.paf
test/evaluation/*/*/*/rawhash
test/evaluation/*/*/*/rawhash2
test/evaluation/*/*/*/uncalled
test/evaluation/*/*/*/*.abundance
test/evaluation/*/comparison/*.throughput
test/evaluation/*/comparison/*.paf
test/evaluation/*/comparison/*.comparison
test/evaluation/*/comparison/comparison.out
test/evaluation/*/comparison/comparison.err
test/evaluation/*/*/sigmap
test/evaluation/*/slurm*.out
test/evaluation/*/*.paf
test/evaluation/*/rawhash
test/evaluation/*/rawhash2
test/evaluation/*/uncalled
test/evaluation/*/sigmap
test/evaluation/read_mapping/*/comparison/*.throughput
test/evaluation/read_mapping/*/comparison/*.paf
test/evaluation/read_mapping/*/comparison/*.comparison
test/evaluation/read_mapping/*/comparison/comparison.out
test/evaluation/read_mapping/*/comparison/comparison.err
test/evaluation/read_mapping/*/*.time
test/evaluation/read_mapping/*/*.out
test/evaluation/read_mapping/*/*.err
test/evaluation/read_mapping/*/*.ind

test/evaluation/*/*/slurm*
test/evaluation/*/*slurm*
test/evaluation/*/*/test_*
test/data/relative_abundance/test*
test/evaluation/*/*/comparison/*/

test/data/relative_abundance/read_ids.txt
test/evaluation/read_mapping/*/parameters.txt
test/evaluation/read_mapping/*/results.txt
test/evaluation/read_mapping/*parameters*.txt

test/*.paf
test/eval/*.paf
test/eval/*.time
test/eval/*.pt
test/eval/*.summary
./test/eval/slurm*.out
.vscode/
.DS_Store
*/.DS_Store
test/*.time
test/*.idx
src/*.o

build/
__pycache__/

extern/pod5*

test/evaluation/rawsamble/*/*.err
test/evaluation/rawsamble/*/*.out
test/evaluation/rawsamble/*/*.paf
test/evaluation/rawsamble/*/*.time
test/evaluation/rawsamble/*/*slurm*
test/evaluation/rawsamble/*/rawsamble*
test/evaluation/rawsamble/*/run_minimap2.sh
test/evaluation/rawsamble/d1_sars-cov-2_r94
test/evaluation/rawsamble/d6_ecoli_r104
test/evaluation/rawsamble/d8_human_hg002_r1041
test/evaluation/rawsamble/d10_dmelanogaster_r1041
test/evaluation/rawsamble/run_params.sh

extern/tensorflow/

test/evaluation/read_mapping/*_parameters/
test/evaluation/read_mapping/s_modify.py