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  • Develop cell cycle annotation framework for symmetrically dividing cells

    When working with symmetrically dividing cells, the mother cell ceases to exist upon division and the two daughter cells typically receive a new ID. Currently, this breaks the automatic mother-bud pairing since the mother ID is not present after division. To solve this, implement the following: - A new mode, called `Cell cycle analysis (symmetric)` - When new cells appear, find the best candidate for the sister cell - Search for the mother cell in previous frame

    No due date
    0% complete0 open0 closed

  • Enable remote execution of all independent subprocesses

    One central limitation of ACDC is posed by the fact, that Segmentation and Tracking algorithms can only be run within the same system ACDC is launched from. This is typically a laptop or PC and GPU access is hence limited to the locally available graphics card. With increasing number of users, we will have more users who also have access to cloud computing resources. Therefore, we should enable remote execution of all processes which are started in separated threads like segmentation, tracking, data prepping,...

    Overdue by 2 year(s)
    •
    Due by December 31, 2023
    •0/1 issues closed
    0% complete1 open0 closed

  • Make ACDC available as Napari plugin

    To increase the reach of Cell-ACDC and also enable another convenient way of installing it, we want to publish the tool as a napari plugin. - Is it technically possible to implement all of ACDC's functionality as a napari plugin? - First step (V0): Implement an ACDC launcher as Napari plugin

    Overdue by 2 year(s)
    •
    Due by December 31, 2023
    0% complete0 open0 closed