update downsampling behavior #21
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| name: TEforest Example Test | |
| on: | |
| push: | |
| workflow_dispatch: | |
| jobs: | |
| example-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Install system dependencies | |
| run: sudo apt-get update && sudo apt-get install -y parallel bc | |
| - name: Set up micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: TEforest.yml | |
| environment-name: TEforest | |
| cache-environment: true | |
| init-shell: bash | |
| - name: Run example pipeline test | |
| run: | | |
| mkdir -p ~/.parallel | |
| touch ~/.parallel/will-cite | |
| micromamba run -n TEforest bash tests/run_example.sh |