Logging at level: debug GitHub Pages: github-pages v232 GitHub Pages: jekyll v3.10.0 Theme: jekyll-theme-primer Theme source: /usr/local/bundle/gems/jekyll-theme-primer-0.6.0 Requiring: jekyll-github-metadata Requiring: jekyll-seo-tag Requiring: jekyll-coffeescript Requiring: jekyll-commonmark-ghpages Requiring: jekyll-gist Requiring: jekyll-github-metadata Requiring: jekyll-paginate Requiring: jekyll-relative-links Requiring: jekyll-optional-front-matter Requiring: jekyll-readme-index Requiring: jekyll-default-layout Requiring: jekyll-titles-from-headings GitHub Metadata: Initializing... Source: /github/workspace/. Destination: /github/workspace/./_site Incremental build: disabled. Enable with --incremental Generating... Generating: JekyllOptionalFrontMatter::Generator finished in 0.000122028 seconds. Generating: JekyllReadmeIndex::Generator finished in 0.002058491 seconds. Generating: Jekyll::Paginate::Pagination finished in 3.957e-06 seconds. GitHub Metadata: Generating for StirlingCodingClub/Manuscripts_in_Rmarkdown GitHub Metadata: Calling @client.pages("StirlingCodingClub/Manuscripts_in_Rmarkdown", {}) Generating: JekyllRelativeLinks::Generator finished in 0.278247971 seconds. Generating: JekyllDefaultLayout::Generator finished in 9.3876e-05 seconds. Generating: JekyllTitlesFromHeadings::Generator finished in 2.3484e-05 seconds. Rendering: IAPETUS_talk.Rmd Pre-Render Hooks: IAPETUS_talk.Rmd Rendering Liquid: IAPETUS_talk.Rmd Rendering Markup: IAPETUS_talk.Rmd Rendering Layout: IAPETUS_talk.Rmd Rendering: Rmarkdown_notes.Rmd Pre-Render Hooks: Rmarkdown_notes.Rmd Rendering Markup: Rmarkdown_notes.Rmd Rendering Layout: Rmarkdown_notes.Rmd Rendering: shiny_app/app2.R Pre-Render Hooks: shiny_app/app2.R Rendering Markup: shiny_app/app2.R Rendering Layout: shiny_app/app2.R Rendering: shiny_app/app2.Rmd Pre-Render Hooks: shiny_app/app2.Rmd Rendering Markup: shiny_app/app2.Rmd Rendering Layout: shiny_app/app2.Rmd Rendering: index.Rmd Pre-Render Hooks: index.Rmd Rendering Markup: index.Rmd Rendering Layout: index.Rmd Rendering: ms.Rmd Pre-Render Hooks: ms.Rmd Rendering Markup: ms.Rmd Rendering Layout: ms.Rmd Rendering: ms.md Pre-Render Hooks: ms.md Rendering Markup: ms.md Requiring: kramdown-parser-gfm Rendering Layout: ms.md Layout source: theme GitHub Metadata: Calling @client.repository("StirlingCodingClub/Manuscripts_in_Rmarkdown", {:accept=>"application/vnd.github.drax-preview+json"})