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Planning HPC Python at HPC2N and UPPMAX

Materials pages

Dates

See the course schedule

  • Thu-Fri 24-25 Apr
  • Mon-Tue 28-29 Apr

Meeting Friday 7th March 14:00-15:00

Notes from previous meeting, link to schedule on course website

  • Welcome to Anders Hast!
    • AH will add this course to the IntraVis newsletter
    • JY wil on-board AH
    • AH needs to use scatter plots, RP already uses that in her sessions
    • AH would enjoy to see scatter plots of images, but maybe this is not necessary. AH will reach out to RP if needed. BB shared this SO post
  • [RB, decision] Let's decide on the theme we use!

    • Materials:

      • https://www.c3se.chalmers.se/
      • NAISS File transfer course
      • Pro:
        • Deeper table of content
        • Used by some colleagues already
        • Many possible settings
        • CSS could help to make everyone happy (?)
      • Con:
        • not everybody likes the look
      • Vote: RB

    • ReadTheDocs (style)

      • Example: Linux-command-line-101 course
      • Pro:
      • Con:
        • not everybody likes the look
        • harder to set up (discussion in matrix)
          • not just to port from sphinx
        • Did not work at Chalmers, but maybe this is caused by they using github or gitlab? as a host. HPC2N use gitea - Vote:

    • Let's wait what NAISS chooses, may be discussed in the NAISS May meeting, or Erik Lindahl picks. Use Sphinx until then

      • [DECIDED!] Vote: BB, RP, JY, BC, PO
  • [RB, decision] I'd love to see the markdown version of the website live, as to see my progress. When will replace the Sphinx build by a build that uses the just-voted-for theme? Let's collect suggestions first, after which we vote on all suggestions we like
    • Whenever someone has the time to do so: RB
    • [Other suggestions]
  • Course NAISS projects:
    • HPC2N: applied for
    • LUNARC: RP will do this
    • UPPMAX: BC can do (directory name with uppmax ending or similar)
    • PDC: BB will do this
    • NSC: BB will do this
  • Status on registrations
    • 7 March 2025:
      • 18 signed up
      • Connecting with
        • Win: 8
        • macOS: 5
        • Linux: 7 (2 also can use Win to connect)
      • Package interest:
        • Pandas: 2
        • scanpy: 1 (single-cell analysis)
        • numpy: 4
        • scipy: 2
        • matplotlib: 2
        • pytorch: 1
        • mph: 1
          • ??Pythonic scripting interface for Comsol Multiphysics
        • scikit-learn: 2
        • xarray: 1
        • dask: 1
        • pint: 1 (manipulate physical quantities)
        • pySCF: 1 (quantum chemistry)
        • "any": 1
      • Linux knowledge:
        • none: 2
        • basic: 11
        • intermediate/some shell scripting: 3
        • Advanced knowledge: 2
      • Python knowledge:
        • none: 2
        • basic: 8
        • intermediate: 4
        • advanced: 4
    • Maybe add interaction with other tools, e.g. links? E.g COMSOL tool
    • Prefer to use/mention generic (as in, not field-specific) Python packages
    • Discuss portability of scripts? E.g. hard-coded Python version in scripts?
      • We cover that already
    • No show ./my_script.py, it is more a bash thing.

Next meeting:

  • Wednesday April 2nd 2025 13:00