battenberg/DESCRIPTION at master · Wedge-lab/battenberg · GitHub

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Package: Battenberg
Maintainer: Stefan Dentro <sd11@sanger.ac.uk>
License: GPL-3
Type: Package
Title: Battenberg subclonal copy number caller
Version: 3.0.0
Encoding: UTF-8
Authors@R: c(person("David", "Wedge", role=c("aut"), email="dw9@sanger.ac.uk"),
    person("Peter", "Van Loo", role=c("aut")),
    person("Naser", "Ansari-Pour", role=c("aut"), email="naser.ansari-pour@imm.ox.ac.uk"),
    person("Stefan","Dentro", email="sd11@sanger.ac.uk", role=c("aut", "cre")),
    person("Maxime","Tarabichi", role = c("aut")),
    person("Jonas","Demeulemeester", role = c("aut")),
    person("Kevin", "Dawson", role=c("ctb")),
    person("Gro", "Nielsen", role="ctb"),
    person("Jiqiu","Cheng", role="ctb"),
    person("Mohammed Faizal","Eeman Mootor", role="ctb"),
    person("Julio Cesar","Cortes Rios", role="ctb"))
Description: Estimate subclonal copy number from whole genome sequencing or SNP6 data.
Depends:
  R (>= 4.3.1),
  stats,
  utils,
  graphics,
  grDevices
Imports:
  RColorBrewer,
  ASCAT (>= 3.1.3),
  ggplot2,
  readr,
  gtools,
  gridExtra,
  doParallel,
  parallel,
  foreach,
  splines,
  GenomicRanges,
  VariantAnnotation,
  copynumber,
  data.table
Remotes:
  VanLoo-lab/ascat/ASCAT
URL: https://github.com/Wedge-Oxford/battenberg
LazyLoad: yes
Suggests:
  testthat,
  knitr,
  rmarkdown,
  ggplot2,
  dplyr
VignetteBuilder:
  knitr
RoxygenNote: 7.3.2