Hi,
I wonder why this 'chr' removing step is added back, as in the loci matching step where Tumor_LogR and GC_data are crosschecked, the GC_data (provided in online) is using the UCSC chr style. The stripping here will lead to no match.
I wonder if I missed anything. After removing the striping, it works now on my hg38 alignments.
Meanwhile, I found that Java has updated the garbage collection and they no longer recognise the UseParallelOldGC . So maybe imput need to change to UseParallelGC or just specify the Java version requirement in the readme.
Many thanks,
Boyu
Hi,
I wonder why this 'chr' removing step is added back, as in the loci matching step where Tumor_LogR and GC_data are crosschecked, the GC_data (provided in online) is using the UCSC chr style. The stripping here will lead to no match.
I wonder if I missed anything. After removing the striping, it works now on my hg38 alignments.
Meanwhile, I found that Java has updated the garbage collection and they no longer recognise the
UseParallelOldGC. So maybe imput need to change toUseParallelGCor just specify the Java version requirement in the readme.Many thanks,
Boyu