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bernt-matthiasbernt-matthias
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cnt: make advanced a section
1 parent 26d6f37 commit c94e1d5

14 files changed

Lines changed: 33 additions & 49 deletions

‎tests/test-data/bool.xml‎

Lines changed: 2 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -84,13 +84,12 @@ python3 '$__tool_directory__/fill_ctd.py' '@EXECUTABLE@.ctd' '$args_json' '$hard
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<param name="sect_flag_true_adv" value="true"/>
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<param name="sect_flag_false_adv" value="false"/>
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</section>
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<conditional name="adv_opts_cond">
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<section name="adv_opts">
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<param name="true_adv" value="true"/>
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<param name="false_adv" value="false"/>
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<param name="flag_true_adv" value="true"/>
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<param name="flag_false_adv" value="false"/>
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<param name="adv_opts_selector" value="advanced"/>
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</conditional>
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</section>
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</test>
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</tests>
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<help><![CDATA[Bool parameter tests.

‎tests/test-data/empty.xml‎

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -47,9 +47,7 @@ python3 '$__tool_directory__/fill_ctd.py' '@EXECUTABLE@.ctd' '$args_json' '$hard
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</outputs>
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<tests>
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<test expect_num_outputs="1">
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<conditional name="adv_opts_cond">
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<param name="adv_opts_selector" value="advanced"/>
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</conditional>
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<section name="adv_opts"/>
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</test>
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</tests>
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<help><![CDATA[empty ctd test

‎tests/test-data/float.xml‎

Lines changed: 2 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -108,7 +108,7 @@ python3 '$__tool_directory__/fill_ctd.py' '@EXECUTABLE@.ctd' '$args_json' '$hard
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<param name="sect_default_mandatory_unrestricted_adv_minmax" value="0.0"/>
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<param name="sect_default_optional_unrestricted_adv_minmax" value="0.0"/>
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</section>
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<conditional name="adv_opts_cond">
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<section name="adv_opts">
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<param name="default_mandatory_unrestricted_adv" value="0.0"/>
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<param name="default_optional_unrestricted_adv" value="0.0"/>
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<param name="default_mandatory_unrestricted_adv_min" value="0.0"/>
@@ -117,8 +117,7 @@ python3 '$__tool_directory__/fill_ctd.py' '@EXECUTABLE@.ctd' '$args_json' '$hard
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<param name="default_optional_unrestricted_adv_max" value="0.0"/>
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<param name="default_mandatory_unrestricted_adv_minmax" value="0.0"/>
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<param name="default_optional_unrestricted_adv_minmax" value="0.0"/>
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<param name="adv_opts_selector" value="advanced"/>
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</conditional>
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</section>
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</test>
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</tests>
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<help><![CDATA[Float parameter tests.

‎tests/test-data/ifile.xml‎

Lines changed: 2 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -890,15 +890,14 @@ ${' '.join(["'test_section.sect_list_mandatory_multformat/%s/%s.%s'"%(i, re.sub(
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<param name="sect_list_mandatory_oneformat_adv" ftype="tsv" value="16test.ext,16test2.ext"/>
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<param name="sect_list_mandatory_multformat_adv" ftype="tabular" value="17test.ext,17test2.ext"/>
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</section>
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<conditional name="adv_opts_cond">
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<section name="adv_opts">
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<param name="mandatory_noformat_adv" ftype="txt" value="18test.ext"/>
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<param name="mandatory_oneformat_adv" ftype="tsv" value="19test.ext"/>
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<param name="mandatory_multformat_adv" ftype="tabular" value="20test.ext"/>
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<param name="list_mandatory_noformat_adv" ftype="txt" value="21test.ext,21test2.ext"/>
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<param name="list_mandatory_oneformat_adv" ftype="tsv" value="22test.ext,22test2.ext"/>
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<param name="list_mandatory_multformat_adv" ftype="tabular" value="23test.ext,23test2.ext"/>
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<param name="adv_opts_selector" value="advanced"/>
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</conditional>
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</section>
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</test>
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</tests>
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<help><![CDATA[Input File parameter tests.

‎tests/test-data/integer.xml‎

Lines changed: 2 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -108,7 +108,7 @@ python3 '$__tool_directory__/fill_ctd.py' '@EXECUTABLE@.ctd' '$args_json' '$hard
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<param name="sect_default_mandatory_unrestricted_adv_minmax" value="0"/>
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<param name="sect_default_optional_unrestricted_adv_minmax" value="0"/>
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</section>
111-
<conditional name="adv_opts_cond">
111+
<section name="adv_opts">
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<param name="default_mandatory_unrestricted_adv" value="0"/>
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<param name="default_optional_unrestricted_adv" value="0"/>
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<param name="default_mandatory_unrestricted_adv_min" value="0"/>
@@ -117,8 +117,7 @@ python3 '$__tool_directory__/fill_ctd.py' '@EXECUTABLE@.ctd' '$args_json' '$hard
117117
<param name="default_optional_unrestricted_adv_max" value="0"/>
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<param name="default_mandatory_unrestricted_adv_minmax" value="0"/>
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<param name="default_optional_unrestricted_adv_minmax" value="0"/>
120-
<param name="adv_opts_selector" value="advanced"/>
121-
</conditional>
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</section>
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</test>
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</tests>
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<help><![CDATA[Integer parameter tests.

‎tests/test-data/label-help.xml‎

Lines changed: 2 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -79,9 +79,8 @@ python3 '$__tool_directory__/fill_ctd.py' '@EXECUTABLE@.ctd' '$args_json' '$hard
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<param name="pteg" value="1 2"/>
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<param name="coie" value="1 2"/>
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<param name="ptie" value="1 2"/>
82-
<conditional name="adv_opts_cond">
83-
<param name="adv_opts_selector" value="advanced"/>
84-
</conditional>
82+
<section name="adv_opts">
83+
</section>
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</test>
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</tests>
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<help><![CDATA[Label Help parameter tests.

‎tests/test-data/ofile-corresponding-input.xml‎

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -292,9 +292,7 @@ python3 '$__tool_directory__/fill_ctd.py' '@EXECUTABLE@.ctd' '$args_json' '$hard
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<param name="input_noformat" ftype="txt" value="0test.ext"/>
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<param name="input_oneformat" ftype="tsv" value="1test.ext"/>
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<param name="input_multformat" ftype="tabular" value="2test.ext"/>
295-
<conditional name="adv_opts_cond">
296-
<param name="adv_opts_selector" value="advanced"/>
297-
</conditional>
295+
<section name="adv_opts"/>
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<output name="mandatory_noformat" ftype="txt" value="outfile.txt"/>
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<output name="mandatory_oneformat" ftype="tsv" value="outfile.txt"/>
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<output name="mandatory_multformat" value="outfile.txt"/>

‎tests/test-data/ofile-mult-typeparam.xml‎

Lines changed: 1 addition & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -90,8 +90,7 @@ ${' '.join(["&& mv -n 'test_section_sect_mandatory_mandatoryinput/%(bn)s/%(id)s.
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<param name="sect_mandatory_mandatoryinput_type" value="eut"/>
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<param name="sect_inp_mandatory_mandatoryinput" ftype="tsv" value="1test.ext,1test2.ext"/>
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</section>
93-
<conditional name="adv_opts_cond">
94-
<param name="adv_opts_selector" value="advanced"/>
93+
<conditional name="adv_opts">
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</conditional>
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<output_collection name="mandatory_mandatoryinput" count="0"/>
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<output_collection name="test_section_sect_mandatory_mandatoryinput" count="0"/>

‎tests/test-data/ofile-mult.xml‎

Lines changed: 2 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -84,9 +84,8 @@ ${' '.join(["&& mv -n 'mandatory_mandatoryinput/%(bn)s/%(id)s.%(gext)s' 'mandato
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<test expect_num_outputs="1">
8585
<param name="inp_mandatory_mandatoryinput" ftype="tsv" value="0test.ext,0test2.ext"/>
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<param name="inp_optional_mandatoryinput" ftype="tsv" value="1test.ext,1test2.ext"/>
87-
<conditional name="adv_opts_cond">
88-
<param name="adv_opts_selector" value="advanced"/>
89-
</conditional>
87+
<section name="adv_opts">
88+
</section>
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<output_collection name="mandatory_mandatoryinput" count="0"/>
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</test>
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</tests>

‎tests/test-data/ofile-typeparam.xml‎

Lines changed: 2 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -383,13 +383,12 @@ python3 '$__tool_directory__/fill_ctd.py' '@EXECUTABLE@.ctd' '$args_json' '$hard
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<param name="sect_decoy_input_oneformat" ftype="tsv" value="4test.ext"/>
384384
<param name="sect_decoy_input_multformat" ftype="tabular" value="5test.ext"/>
385385
</section>
386-
<conditional name="adv_opts_cond">
386+
<section name="adv_opts">
387387
<param name="mandatory_noformat_adv_type" value="ext"/>
388388
<param name="optional_noformat_adv_type" value="ext"/>
389389
<param name="mandatory_multformat_adv_type" value="ext"/>
390390
<param name="optional_multformat_adv_type" value="ext"/>
391-
<param name="adv_opts_selector" value="advanced"/>
392-
</conditional>
391+
</section>
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<output name="mandatory_noformat" ftype="txt" value="outfile.txt"/>
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<output name="mandatory_multformat" ftype="tsv" value="outfile.txt"/>
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<output name="mandatory_noformat_adv" ftype="txt" value="outfile.txt"/>

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