Update ShinyCardinal to v1.0.0

[YonghuiDong]

Rationale

This is a major update for R package Cardinal with some breaking changes (v.3.6)

Some highlights include:

• Redesigned data structures
• Updated MSImagingExperiment class for MS imaging data with shared m/z values
• New MSImagingArrays class for MS imaging data with different m/z values
• All statistical methods (including PCA, PLS, spatial k-means, and spatial shrunken centroids) have been updated for improved speed and simpler storage of results
• New pre-processing workflow with better support for high-resolution experiments
• New support for multiple-instance learning
• New plotting engine

In order to fully leverage the new features and functionalities of Cardinal, and keep pace with it, I need to update ShinyCardinal accordingly.

To-dos (details to be added)

• Update old functions from Cardinal
• Introduce new functions from Cardinal
• Fix penitential bugs
• Introduce some user requested features
• Update UI
• Submit Cardinal to Bioconductor

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Any recommendations and contributions are welcomed. ♥️♥️♥️

[codexyster]

Hi, is it possible to add a function to export the sliced data (such as ion images) to array? In typical cardinal, it can be achieved with iData(data_name, "intensity")[mz_index, pixel_index].