test_PRs.yml

name: tests on stable

on:
  push:
    branches-ignore:    
      - "develop"
  pull_request:
    branches: [ "develop" ]
  workflow_dispatch:
    
env:
  CARGO_TERM_COLOR: always

jobs:
  skip_check:
    runs-on: ubuntu-latest
    # Map a step output to a job output
    outputs:
      should_skip: ${{ steps.skip_check.outputs.should_skip }}
    steps:
      - id: skip_check
        uses: fkirc/skip-duplicate-actions@v5
        with:
          # All of these options are optional, so you can remove them if you are happy with the defaults
          concurrent_skipping: 'same_content_newer'
          skip_after_successful_duplicate: 'true'
          cancel_others: 'true'
          paths_ignore: '["**/**.yml", "**/data/**"]'
          do_not_skip: '["workflow_dispatch"]'

  check:
    name: cargo check
    needs: skip_check
    if: needs.skip_check.outputs.should_skip != 'true'
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: dtolnay/rust-toolchain@stable
      - uses: actions-rs/cargo@v1
        with:
          command: check
          args: --manifest-path ./phylo/Cargo.toml

  test:
    name: cargo test
    needs: skip_check
    if: needs.skip_check.outputs.should_skip != 'true'
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - uses: dtolnay/rust-toolchain@nightly
    - name: install cargo2junit
      run: |
        cargo install cargo2junit
    - name: Running cargo tests 
      run: |
        cargo test --manifest-path ./phylo/Cargo.toml -- -Z unstable-options --format json --report-time > cargo_test.out
    - name: Display cargo test output
      if: always()
      run: |
        cat cargo_test.out
    - name: Running cargo2junit
      if: always()
      run: |
        cargo2junit < cargo_test.out > results.xml
    - name: Display cargo2junit output
      if: always()
      run: |
        cat results.xml
    - name: Publish test results
      uses: EnricoMi/publish-unit-test-result-action@v2
      if: always()
      with:
          github_token: ${{ secrets.GITHUB_TOKEN }}
          files: results.xml