ctDNAtools/_pkgdown.yml at master · alkodsi/ctDNAtools · GitHub

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url: https://alkodsi.github.io/ctDNAtools/
destination: docs

template:
  params:
    bootswatch: flatly

reference:
  - title: Minimal Residual Disease testing
    contents:
    - test_ctDNA
    - create_background_panel
    - create_black_list
    - merge_mutations_in_phase
    - get_mutations_read_counts
    - get_mutations_read_names
    - get_background_rate
    - filter_mutations

  - title: Fragmentation
    contents:
    - get_fragment_size
    - bin_fragment_size
    - summarize_fragment_size
    - analyze_fragmentation
    - get_mutations_fragment_size

  - title: Other
    contents:
    - extract_trinucleotide_context
    - vcf_to_mutations_df

  - title: Data
    contents:
    - mutations
    - targets