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Added IGs and example resources
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Lines changed: 577 additions & 6 deletions

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‎env/aidbox‎

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@@ -26,7 +26,7 @@ BOX_FEATURES_FTR_PULL_ENABLE=false
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AIDBOX_SDC_ENABLED=false
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AIDBOX_FHIR_SCHEMA_VALIDATION=true
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AIDBOX_FHIR_PACKAGES=hl7.fhir.r4b.core#4.3.0
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AIDBOX_FHIR_PACKAGES=hl7.fhir.r4b.core#4.3.0:hl7.fhir.ph.core.r4b#0.1.0
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AIDBOX_TERMINOLOGY_SERVICE_BASE_URL="https://tx.health-samurai.io/fhir"
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BOX_INIT_BUNDLE="file:///resources/seeds/initBundle.json"

‎package.ph.r4b.tgz‎

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‎package.tgz‎

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‎resources/seeds/AllergyIntolerance/allergy-single-ex.yaml‎

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resourceType: AllergyIntolerance
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id: allergy-single-ex
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meta:
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profile:
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- "urn://example.com/ph-core/fhir/StructureDefinition/ph-core-allergyintolerance"
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text:
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status: generated
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div: '<div xmlns="http://www.w3.org/1999/xhtml">Juan Dela Cruz has a high criticality, active allergy to Benethamine penicillin.</div>'
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code:
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coding:
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- code: "294494002"
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system: "http://snomed.info/sct"
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display: "Benethamine penicillin allergy"
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criticality: high
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clinicalStatus:
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coding:
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- code: active
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system: "http://terminology.hl7.org/CodeSystem/allergyintolerance-clinical"
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display: Active
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patient:
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reference: Patient/patient-single-ex

‎resources/seeds/Condition/condition-single-ex.yaml‎

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resourceType: Condition
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id: condition-single-ex
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meta:
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profile:
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- "urn://example.com/ph-core/fhir/StructureDefinition/ph-core-condition"
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text:
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status: generated
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div: '<div xmlns="http://www.w3.org/1999/xhtml">Juan Dela Cruz has an active diagnosis of Type 2 Diabetes Mellitus.</div>'
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clinicalStatus:
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coding:
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- code: active
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system: "http://terminology.hl7.org/CodeSystem/condition-clinical"
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display: Active
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code:
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coding:
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- code: "44054006"
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system: "http://snomed.info/sct"
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display: "Diabetes mellitus type 2"
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subject:
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reference: Patient/patient-single-ex
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encounter:
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reference: Encounter/encounter-single-ex

‎resources/seeds/Encounter/encounter-single-ex.yaml‎

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resourceType: Encounter
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id: encounter-single-ex
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meta:
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profile:
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- "urn://example.com/ph-core/fhir/StructureDefinition/ph-core-encounter"
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text:
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status: generated
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div: '<div xmlns="http://www.w3.org/1999/xhtml">An ambulatory encounter for Juan Dela Cruz that has been completed.</div>'
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status: finished
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class:
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code: AMB
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system: "http://terminology.hl7.org/CodeSystem/v3-ActCode"
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display: ambulatory
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subject:
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reference: Patient/patient-single-ex
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serviceProvider:
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reference: Organization/organization-single-ex

‎resources/seeds/Immunization/immunization-single-ex.yaml‎

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resourceType: Immunization
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id: immunization-single-ex
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meta:
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profile:
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- "urn://example.com/ph-core/fhir/StructureDefinition/ph-core-immunization"
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identifier:
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- system: "urn:ietf:rfc:3986"
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value: "urn:oid:1.3.6.1.4.1.21367.2005.3.7.1234"
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note:
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- text: "Notes on adminstration of vaccine"
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performer:
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- actor:
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reference: Practitioner/practitioner-single-ex
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function:
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coding:
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- code: OP
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system: "http://terminology.hl7.org/CodeSystem/v2-0443"
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vaccineCode:
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coding:
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- code: "123"
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system: "http://hl7.org/fhir/sid/cvx"
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text: "influenza, H5N1-1203"
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text:
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status: generated
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div: '<div xmlns="http://www.w3.org/1999/xhtml">Juan Dela Cruz received a completed intramuscular flu shot (H5N1-1203) in the left arm on January 10, 2013. The vaccine lot number was AAJN11K and it was privately funded.</div>'
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doseQuantity:
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value: 5
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code: mg
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system: "http://unitsofmeasure.org"
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encounter:
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reference: Encounter/encounter-single-ex
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expirationDate: "2015-02-15"
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fundingSource:
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coding:
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- code: private
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system: "http://terminology.hl7.org/CodeSystem/immunization-funding-source"
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isSubpotent: true
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lotNumber: AAJN11K
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occurrenceDateTime: "2013-01-10"
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patient:
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reference: Patient/patient-single-ex
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primarySource: true
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route:
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coding:
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- code: IM
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system: "http://terminology.hl7.org/CodeSystem/v3-RouteOfAdministration"
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display: "Injection, intramuscular"
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site:
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coding:
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- code: LA
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system: "http://terminology.hl7.org/CodeSystem/v3-ActSite"
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display: "left arm"
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status: completed

‎resources/seeds/Mapping/patient-create.yaml‎

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body:
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$let:
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contactMobile: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='contact-mobile').answer.valueString").0
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address: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='address').answer.valueString").0
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contactFirstName: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='contact-first-name').answer.valueString").0
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email: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='email').answer.valueString").0
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addContact: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='add-contact').answer.valueBoolean").0
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contactLastName: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='contact-last-name').answer.valueString").0
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birthDate: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='birth-date').answer.valueDate").0
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ssn: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='ssn').answer.valueString").0
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firstName: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='first-name').answer.valueString").0
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contactEmail: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='contact-email').answer.valueString").0
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hmo: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='hmo').answer.valueReference").0
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phm: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='phm').answer.valueReference").0
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lastName: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='last-name').answer.valueString").0
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navigator: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='navigator').answer.valueReference").0
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contactRelationship: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='contact-relationship').answer.valueCoding").0
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gender: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='gender').answer.valueCoding.code").0
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mobile: >-
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$
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fhirpath("QuestionnaireResponse.repeat(item).where(linkId='mobile').answer.valueString").0
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$body:
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$let:
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hmoReferenceSplit:
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$args:
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- $ hmo.reference
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- /
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$call: splitStr
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phmReferenceSplit:
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$args:
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- $ phm.reference
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- /
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$call: splitStr
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navigatorReferenceSplit:
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$args:
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- $ navigator.reference
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- /
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$call: splitStr
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$body:
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type: transaction
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entry:
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- request:
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url: /Patient
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method: POST
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resource:
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address:
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- text: $ address
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managingOrganization:
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id: $ hmoReferenceSplit.1
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display: $ hmo.display
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resourceType: $ hmoReferenceSplit.0
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name:
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- given:
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- $ firstName
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family: $ lastName
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birthDate: $ birthDate
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resourceType: Patient
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active: true
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identifier:
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- value: $ ssn
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system: http://fhir.health.gov.il/identifier/il-national-id
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telecom:
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- value: $ mobile
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system: phone
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- value: $ email
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system: email
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gender: $ gender
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contact:
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- $if: $ addContact
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$then:
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name:
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given:
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- $ contactFirstName
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family: $ contactLastName
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telecom:
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- use: work
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value: $ contactMobile
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system: phone
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- use: work
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value: $ contactEmail
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system: email
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relationship:
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- coding:
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- code: $ contactRelationship.code
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system: $ contactRelationship.system
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display: $ contactRelationship.display
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- request:
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url: /CareTeam
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method: POST
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resource:
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status: active
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participant:
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- member:
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id: $ phmReferenceSplit.1
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display: $ phm.display
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identifier:
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value: phm
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resourceType: $ phmReferenceSplit.0
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- member:
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id: $ navigatorReferenceSplit.1
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display: $ navigator.display
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identifier:
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value: navigator
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resourceType: $ navigatorReferenceSplit.0
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resourceType: CareTeam
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resourceType: Bundle
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id: patient-create
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resourceType: Mapping

‎resources/seeds/Medication/edication-single-ex.yaml‎

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resourceType: Medication
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id: medication-single-ex
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meta:
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profile:
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- "urn://example.com/ph-core/fhir/StructureDefinition/ph-core-medication"
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text:
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status: generated
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div: '<div xmlns="http://www.w3.org/1999/xhtml">A medication resource has been created, but no specific details are provided.</div>'

‎resources/seeds/Observation/observation-single-ex.yaml‎

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resourceType: Observation
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id: observation-single-ex
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meta:
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profile:
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- "urn://example.com/ph-core/fhir/StructureDefinition/ph-core-observation"
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- "http://hl7.org/fhir/StructureDefinition/vitalsigns"
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- "http://hl7.org/fhir/StructureDefinition/bp"
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identifier:
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- system: "urn:ietf:rfc:3986"
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value: "urn:uuid:187e0c12-8dd2-67e2-99b2-bf273c878281"
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basedOn:
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- identifier:
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system: "https://acme.org/identifiers"
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value: "1234"
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category:
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- coding:
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- code: vital-signs
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system: "http://terminology.hl7.org/CodeSystem/observation-category"
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display: "Vital Signs"
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code:
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coding:
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- code: 85354-9
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system: "http://loinc.org"
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display: "Blood pressure panel with all children optional"
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text: "Blood pressure systolic & diastolic"
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performer:
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- reference: Practitioner/practitioner-single-ex
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interpretation:
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- coding:
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- code: L
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system: "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation"
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display: Low
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text: "Below low normal"
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component:
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- interpretation:
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- coding:
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- { code: N, system: "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation", display: Normal }
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text: Normal
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code:
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coding:
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- code: 8480-6
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system: "http://loinc.org"
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display: "Systolic blood pressure"
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valueQuantity:
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value: 107
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code: "mm[Hg]"
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system: "http://unitsofmeasure.org"
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unit: mmHg
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- interpretation:
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- coding:
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- { code: L, system: "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation", display: Low }
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text: "Below low normal"
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code:
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coding:
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- code: 8462-4
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system: "http://loinc.org"
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display: "Diastolic blood pressure"
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valueQuantity:
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value: 60
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code: "mm[Hg]"
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system: "http://unitsofmeasure.org"
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unit: mmHg
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text:
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status: generated
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div: '<div xmlns="http://www.w3.org/1999/xhtml">On 17 September 2012, a blood pressure observation was recorded for Juan Dela Cruz. The systolic pressure was 107 mmHg (Normal), and the diastolic pressure was 60 mmHg (Below low normal). The measurement was taken from the right arm and performed by a practitioner.</div>'
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status: final
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subject:
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reference: Patient/patient-single-ex
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effectiveDateTime: "2012-09-17"
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bodySite:
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coding:
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- code: "368209003"
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system: "http://snomed.info/sct"
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display: "Right arm"

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