diff --git a/src/CHANGES.md b/src/CHANGES.md index c5a9f36951..127fd31bcd 100644 --- a/src/CHANGES.md +++ b/src/CHANGES.md @@ -77,7 +77,7 @@ - \[FIX] Add misssing files in filename template for NIRS [1716](https://github.com/bids-standard/bids-specification/pull/1716) ([Remi-Gau](https://github.com/Remi-Gau)) - \[FIX] Remove task entity from DWI and PERF time series file templates [1703](https://github.com/bids-standard/bids-specification/pull/1703) ([Remi-Gau](https://github.com/Remi-Gau)) - \[FIX] Add `part-` to the PEPOLAR fieldmaps [1685](https://github.com/bids-standard/bids-specification/pull/1685) ([oesteban](https://github.com/oesteban)) -- \[INFRA] Publish schema to Javascript Registry (https://jsr.io/@bids/schema) on changes and releases [1899](https://github.com/bids-standard/bids-specification/pull/1899) ([effigies](https://github.com/effigies)) +- \[INFRA] Publish schema to Javascript Registry () on changes and releases [1899](https://github.com/bids-standard/bids-specification/pull/1899) ([effigies](https://github.com/effigies)) - \[INFRA] Introduce metaschema [1787](https://github.com/bids-standard/bids-specification/pull/1787) ([bendichter](https://github.com/bendichter)) - \[MISC] Restructure MEG empty room example texts [1677](https://github.com/bids-standard/bids-specification/pull/1677) ([guiomar](https://github.com/guiomar)) diff --git a/src/appendices/meg-systems.md b/src/appendices/meg-systems.md index 9ae9fa3012..3584a887c7 100644 --- a/src/appendices/meg-systems.md +++ b/src/appendices/meg-systems.md @@ -13,18 +13,18 @@ Preferred names of MEG systems comprise restricted keywords for Manufacturer fie Restricted keywords for ManufacturersModelName field in the `*_meg.json` file: -| **System Model Name** | **Manufacturer** | **Details** | -| ------------------------- | --------- ----------- | -------------------------------------------------------------------------------------------- | -| CTF-64 | CTF | | -| CTF-151 | CTF | [https://www.ctf.com/products](https://www.ctf.com/products) | -| CTF-275 | CTF | CTF-275: OMEGA 2000 | -| Neuromag-122 | Neuromag/Elekta/Megin | | -| ElektaVectorview | Neuromag/Elekta/Megin | 102 magnetometers + 204 planar gradiometers | -| ElektaTRIUX | Neuromag/Elekta/Megin | [https://www.elekta.com/products/neurosurgery/](https://www.elekta.com/products/neurosurgery/) | -| 4D-Magnes-WH2500 | BTi/4D | | -| 4D-Magnes-WH3600 | BTi/4D | | -| KIT-157 | KIT/Yokogawa | | -| KIT-160 | KIT/Yokogawa | | -| KIT-208 | KIT/Yokogawa | | -| ITAB-ARGOS153 | ITAB | | -| Aalto-MEG-MRI-YYYY/MM | Aalto/MEG-MRI | YYYY-MM (year, month; or major version) | +| **System Model Name** | **Manufacturer** | **Details** | +| --------------------- | --------------------- | ----------------------------------------------- | +| CTF-64 | CTF | | +| CTF-151 | CTF | | +| CTF-275 | CTF | CTF-275: OMEGA 2000 | +| Neuromag-122 | Neuromag/Elekta/Megin | | +| ElektaVectorview | Neuromag/Elekta/Megin | 102 magnetometers + 204 planar gradiometers | +| ElektaTRIUX | Neuromag/Elekta/Megin | | +| 4D-Magnes-WH2500 | BTi/4D | | +| 4D-Magnes-WH3600 | BTi/4D | | +| KIT-157 | KIT/Yokogawa | | +| KIT-160 | KIT/Yokogawa | | +| KIT-208 | KIT/Yokogawa | | +| ITAB-ARGOS153 | ITAB | | +| Aalto-MEG-MRI-YYYY/MM | Aalto/MEG-MRI | YYYY-MM (year, month; or major version) | diff --git a/src/common-principles.md b/src/common-principles.md index e5b7240361..421a9938c5 100644 --- a/src/common-principles.md +++ b/src/common-principles.md @@ -15,7 +15,7 @@ REQUIRED, RECOMMENDED, and OPTIONAL. The guiding principles for when particular data is placed under a given requirement level can be loosely described as below: -- REQUIRED: Data cannot be be interpreted without this information (or the ambiguity is unacceptably high) +- REQUIRED: Data cannot be interpreted without this information (or the ambiguity is unacceptably high) - RECOMMENDED: Interpretation/utility would be dramatically improved with this information - OPTIONAL: Users and/or tools might find it useful to have this information @@ -93,7 +93,7 @@ be reviewed to include common data types in the future releases of the BIDS specification. It is RECOMMENDED that non-compulsory metadata fields (like `notch` in `channels.tsv` files) -and/or files (like `events.tsv`) are fully omitted *when they are unavailable or unapplicable*, +and/or files (like `events.tsv`) are fully omitted *when they are unavailable or inapplicable*, instead of specified with an `n/a` value, or included as an empty file (for example an empty `events.tsv` file with only the headers included). @@ -631,7 +631,7 @@ Rules for formatting plain-text tabular files apply to TSVGZ files with three ex !!! warning "Attention" In contrast to plain-text TSV files, - compressed tabular files files MUST NOT include a header line. + compressed tabular files MUST NOT include a header line. Column names MUST be provided in the JSON file with the [`Columns`](glossary.md#columns-metadata) field. Each column MAY additionally be described with a column description, @@ -1067,7 +1067,7 @@ Describing dates and timestamps: - Dates can be shifted by a random number of days for privacy protection reasons. To distinguish real dates from shifted dates, - is is RECOMMENDED to set shifted dates to the year 1925 or earlier. + it is RECOMMENDED to set shifted dates to the year 1925 or earlier. Note that some data formats do not support arbitrary recording dates. For example, the [EDF](https://www.edfplus.info/) data format can only contain recording dates after 1985. diff --git a/src/schema/objects/entities.yaml b/src/schema/objects/entities.yaml index be94a5eb0a..4161b04cd1 100644 --- a/src/schema/objects/entities.yaml +++ b/src/schema/objects/entities.yaml @@ -150,7 +150,7 @@ inversion: If files belonging to an entity-linked file collection are acquired at different inversion times, the `inv-` entity MUST be used to distinguish individual files. - This entity represents the `"InversionTime` metadata field. + This entity represents the `"InversionTime"` metadata field. Therefore, if the `inv-` entity is present in a filename, `"InversionTime"` MUST be defined in the associated metadata. Please note that the `` denotes the number/index (in the form of a nonnegative integer), diff --git a/src/schema/rules/checks/deprecations.yml b/src/schema/rules/checks/deprecations.yml index d7a3c27372..d45be8356a 100644 --- a/src/schema/rules/checks/deprecations.yml +++ b/src/schema/rules/checks/deprecations.yml @@ -1,3 +1,4 @@ +--- AnatomicalLandmarkCoordinateSystemDeprecation: issue: code: ELEKTA_NEUROMAG_DEPRECATED