Auto-update examples #675
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| name: Pytest | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main, dev ] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| lfs: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install pytest pytest-cov | |
| pip install . | |
| - name: Verify test data files | |
| run: | | |
| ls -la tests/resources/maxquant/PXD003133-22min/ | |
| echo "Checking if test data files exist..." | |
| if [ ! -f "tests/resources/maxquant/PXD003133-22min/proteinGroups.txt.gz" ]; then | |
| echo "Warning: Test data files are missing. Tests may be skipped." | |
| else | |
| echo "Test data files found." | |
| fi | |
| - name: Test with pytest | |
| run: | | |
| pytest tests/ -v --cov=pmultiqc | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: false |