Quotes in species names #293
Description
Hi!
I used R to analyse outputs of your tool and faced some problems with production of tables form them. Some of species names in your database, such as "Synechococcus sp. JA-2-3 B'a(2-13)", contain unpaired quotes, so it makes R produce wrong and very long records in tables.
For example I ran this code
kaiju <- read.table("path/to/sample.names.out", sep = ";", na.strings = " NA")
to start analyse microbiome diversity of my sample and one of records looked like this:
"Synechococcus sp. JA-2-3 Ba(2-13); C contig_5117 853 Bacteria; Bacillota; Clostridia...", while other records in the same column contained only species names.