Skip to content

CHANGELOG.md

Latest commit

 

History

History
241 lines (148 loc) · 13.2 KB

CHANGELOG.md

File metadata and controls

241 lines (148 loc) · 13.2 KB
Raw

Changelog

All notable changes to this project will be documented in this file. Dates are displayed in UTC.

Generated by auto-changelog.

3.1.6

  • Test if alias is None and not a list create an empty list first to avoid TypeError: argument of type 'NoneType' is not iterable cba01d7
  • Dev Version update e5ba7db

3.1.5

18 November 2025

  • Consolidate file dedup to occur not only on files per readsets but overall 9fdd545
  • Merge topups with samples with a different name, remap readsets and add name to alias ff2aa05
  • Adding a unique constraint check when editing e5631db

3.1.4

7 November 2025

  • [create-pull-request] automated change 9e797c6
  • Debug ingest_delivery 103aff1
  • Dev Version update 89127ef

3.1.3

6 November 2025

  • Adding already existing location warning f547c67
  • [create-pull-request] automated change 1b5ecc1
  • Debug StateEnum equality test e459b39

3.1.2

27 October 2025

3.1.1

23 October 2025

  • Adding file cleaning script + uniqueness returns on associated IDs and routes 6b4648c
  • Catching readsets uniqueness at first of ingestion to catch them all keeping flushes in model.py 548f9e8
  • Debug filtering logic b4a472a

3.1.0

14 October 2025

  • Issue with JSON and distinct in SQL bb99b89
  • Manual release Action c4d91a3
  • [create-pull-request] automated change 3977f41

3.0.0

10 October 2025

  • Principal changes 2409ea5
  • Use marshmallow for serialization + add warnings when "modification" receives a null value + add regex name search + optimize some select queries b0edcb4
  • Consolidating pytests + adding readset, sample and specimen to be returned when querying some entities b7a38f9

2.3.0

8 May 2025

  • Converting select statements to query + making sure deliverables and deleted are properly handled + adding getid method + multiple debugs 6ec4c32
  • Adding utils for db curation 450d8bc
  • Adding Action to sync dev with main after a release and make a .dev version based on latest release 200137f

2.2.0

27 January 2025

  • [create-pull-request] automated change 62b6c88
  • Otherwise sometimes some readsets were not ingested 1a9b3de

2.1.1

20 November 2024

  • New migration script for Metric value not nullable 67065db
  • [create-pull-request] automated change 8dcdb49
  • Allowing null value for Metric da85b8b

2.1.0

12 November 2024

  • Adding versioning with PDM + consolidating digests 7cfa958
  • Consolidating workflows cd9ba04
  • [create-pull-request] automated change 84a106e

2.0

11 September 2024

1.0.7

7 February 2024

  • Dev #33
  • Moving the raise for unique constraint failed on readset when ingesting run processing when flushing 9c3d349
  • Adding a raise for unique constraint failed on readset when ingesting run processing 1a1e096
  • Checking which readset(s) in causing the unique constraint failure 0e725c3

1.0.6

7 February 2024

1.0.5

5 February 2024

  • Paulstretenowich patch 1 #30
  • Adding back GET method to POST only f1aeca2
  • Consolidating POST only routes f5cfa61
  • Update build_image.yml Versions 77c630e

1.0.4

5 February 2024

1.0.3

5 February 2024

  • Update build_image.yml Versions #29

1.0.2

2 February 2024

  • update action tool versions c36b8ce

1.0.1

2 February 2024

  • Adding back GET method to POST only #28

1.0.0

16 January 2024

  • Dev #27
  • Paulstretenowich patch 1 #25
  • Release container with latest_release tag on gitub release #26
  • Update pyproject.toml to fix enum error message #24
  • Dev #23
  • Dev #22

0.0.12

15 January 2024

0.0.11

15 January 2024

0.0.10

15 January 2024

0.0.9

15 January 2024

0.0.8

15 January 2024

0.0.7

15 January 2024

  • Tag image on quay on releases 65e389c
  • remove garbage form action 5d3f548

0.0.6

19 December 2023

0.0.5

19 December 2023

0.0.4

19 December 2023

0.0.3

19 December 2023

  • Dev #21
  • Custom Exception handler + switch from project_name to project_id + a… #20
  • Dev #19
  • Ingest genpipes #18
  • Adding digest pair file #17
  • Digest readset file #15
  • Dev #14
  • Polish api #9
  • Add api for ingestion of run processing #8
  • Dev stretenp #5
  • Gh action test #6
  • minimal testing action #4
  • serialization and repr added to model #3
  • test model prototype #2
  • model is working #1
  • mixing dataclass and declarative mapping 65d7910
  • First package version f3c0968
  • first commit c31c2c2