Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
cBioPortal
cbioportal-mcp
Repository navigation
Code
Issues
27
(27)
Pull requests
7
(7)
Actions
Projects
Security and quality
Insights
More
items
Actions: cBioPortal/cbioportal-mcp
Actions
All workflows
Workflows
Build and Push Docker Image
Build and Push Docker Image
Copilot cloud agent
Copilot cloud agent
Copilot code review
Copilot code review
MCP regression
MCP regression
Show more workflows...
Management
Caches
All workflows
All workflows
Actions
Loading...
Loading
Sorry, something went wrong.
Uh oh!
There was an error while loading.
Please reload this page
.
will be ignored since log searching is not yet available
Showing runs from all workflows
will be ignored since log searching is not yet available
190 workflow runs
190 workflow runs
Workflow
Filter by Workflow
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching workflows.
Event
Filter by Event
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching events.
Status
Filter by Status
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching statuses.
Branch
Filter by Branch
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching branches.
Actor
Filter by Actor
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching users.
Match every word of a list_studies search, in any order (#137)
Build and Push Docker Image
#93:
Commit
96425d5
pushed by
inodb
1m 14s
main
main
1m 14s
View workflow file
Route survival questions to KM handoff; drop raw-median OS example (#…
Build and Push Docker Image
#92:
Commit
bbe6d24
pushed by
inodb
1m 27s
main
main
1m 27s
View workflow file
Make study guides name only clinical attributes that exist
MCP regression
#18:
Pull request
#143
opened by
inodb
1m 28s
study-guides-match-live-attributes
study-guides-match-live-attributes
1m 28s
View #143
View workflow file
Compute os_target_gdc age at diagnosis from DAYS_TO_BIRTH (#136)
Build and Push Docker Image
#91:
Commit
e52d8c6
pushed by
inodb
1m 36s
main
main
1m 36s
View workflow file
Document ClickHouse LEFT JOIN defaults and add prompt pointers to key pitfalls
MCP regression
#17:
Pull request
#142
opened by
inodb
1m 11s
pitfalls-left-join-and-prompt-pointers
pitfalls-left-join-and-prompt-pointers
1m 11s
View #142
View workflow file
Document group denominators, combined alteration rates and cohort choice
MCP regression
#16:
Pull request
#141
opened by
inodb
1m 8s
frequency-denominators-and-cohorts
frequency-denominators-and-cohorts
1m 8s
View #141
View workflow file
Match every word of a list_studies search, in any order
MCP regression
#15:
Pull request
#137
labeled by
inodb
1m 22s
list-studies-token-search
list-studies-token-search
1m 22s
View #137
View workflow file
Add top_mutated_genes_in_study view; document where shallow CNA lives
MCP regression
#14:
Pull request
#140
opened by
inodb
1m 43s
top-genes-in-study-and-shallow-cna
top-genes-in-study-and-shallow-cna
1m 43s
View #140
View workflow file
Route survival questions to KM handoff; drop raw-median OS example
MCP regression
#13:
Pull request
#139
opened by
inodb
1m 5s
survival-guidance-no-raw-medians
survival-guidance-no-raw-medians
1m 5s
View #139
View workflow file
Compute os_target_gdc age at diagnosis from DAYS_TO_BIRTH
MCP regression
#12:
Pull request
#136
synchronize by
inodb
1m 39s
os-target-age-at-diagnosis
os-target-age-at-diagnosis
1m 39s
View #136
View workflow file
Count mRNA expression samples from profiles, not sample lists
MCP regression
#11:
Pull request
#138
opened by
inodb
59s
mrna-expression-sample-count
mrna-expression-sample-count
59s
View #138
View workflow file
Match every word of a list_studies search, in any order
MCP regression
#10:
Pull request
#137
opened by
inodb
1m 5s
list-studies-token-search
list-studies-token-search
1m 5s
View #137
View workflow file
Compute os_target_gdc age at diagnosis from DAYS_TO_BIRTH
MCP regression
#9:
Pull request
#136
labeled by
inodb
1m 14s
os-target-age-at-diagnosis
os-target-age-at-diagnosis
1m 14s
View #136
View workflow file
Compute os_target_gdc age at diagnosis from DAYS_TO_BIRTH
MCP regression
#8:
Pull request
#136
opened by
inodb
1m 7s
os-target-age-at-diagnosis
os-target-age-at-diagnosis
1m 7s
View #136
View workflow file
Document CRC sidedness pitfall (#113)
Build and Push Docker Image
#90:
Commit
388b12f
pushed by
inodb
1m 25s
main
main
1m 25s
View workflow file
Prevent colon-vs-rectum substitution for CRC sidedness
MCP regression
#7:
Pull request
#113
synchronize by
inodb
13s
ForisKuang:fix/issue-100-crc-sidedness
ForisKuang:fix/issue-100-crc-sidedness
13s
View #113
View workflow file
Lock ACC scope to site-specific OncoTree matches (#114)
Build and Push Docker Image
#89:
Commit
d71bd6a
pushed by
inodb
1m 43s
main
main
1m 43s
View workflow file
Keep ACC answers scoped to site-specific OncoTree matches
MCP regression
#6:
Pull request
#114
synchronize by
inodb
9s
ForisKuang:fix/issue-94-acc-salivary-scope
ForisKuang:fix/issue-94-acc-salivary-scope
9s
View #114
View workflow file
Match germline mutation status case-insensitively in the germline gui…
Build and Push Docker Image
#88:
Commit
abd7cdf
pushed by
inodb
1m 9s
main
main
1m 9s
View workflow file
Match germline mutation status case-insensitively in the germline guide
MCP regression
#5:
Pull request
#135
opened by
inodb
1m 9s
germline-guide-case-insensitive
germline-guide-case-insensitive
1m 9s
View #135
View workflow file
Harden literature boundary for rare variants (#112)
Build and Push Docker Image
#87:
Commit
222471c
pushed by
inodb
1m 35s
main
main
1m 35s
View workflow file
Add germline variant support guide and server registration (#20) (#39)
Build and Push Docker Image
#86:
Commit
587188d
pushed by
inodb
1m 25s
main
main
1m 25s
View workflow file
Add germline variant support guide and server registration
MCP regression
#4:
Pull request
#39
synchronize by
inodb
9s
ForisKuang:fix/issue-20-germline-variant-support
ForisKuang:fix/issue-20-germline-variant-support
9s
View #39
View workflow file
Harden literature scope boundary for rare variant answers
MCP regression
#3:
Pull request
#112
synchronize by
inodb
8s
ForisKuang:fix/issue-99-literature-scope-boundary
ForisKuang:fix/issue-99-literature-scope-boundary
8s
View #112
View workflow file
Default user code samples to cBioPortal REST API (#111)
Build and Push Docker Image
#85:
Commit
8690869
pushed by
inodb
1m 12s
main
main
1m 12s
View workflow file
Previous
1
2
3
4
5
6
7
8
Next
You can’t perform that action at this time.