From 3dc555f43c465d71448a1c22c3e41c30987de8a7 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:04 -0500 Subject: [PATCH 01/22] Update djangorestframework from 3.10.3 to 3.15.2 --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ab4d5e94..03805c3e 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,7 +1,7 @@ # Additional requirements go here -djangorestframework==3.10.3 +djangorestframework==3.15.2 django-filter==2.2.0 django-genomix==1.1.0 From 9f255b1e1afa0e0ea993aed8d8720fd0fb79f7dc Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:05 -0500 Subject: [PATCH 02/22] Update django-filter from 2.2.0 to 24.3 --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 03805c3e..473b9e81 100644 --- a/requirements.txt +++ b/requirements.txt @@ -3,7 +3,7 @@ djangorestframework==3.15.2 -django-filter==2.2.0 +django-filter==24.3 django-genomix==1.1.0 django-model-utils==3.2.0 From aee219cd77667928027541cca11aed85d796b134 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:06 -0500 Subject: [PATCH 03/22] Update django-model-utils from 3.2.0 to 5.0.0 --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 473b9e81..fb6003db 100644 --- a/requirements.txt +++ b/requirements.txt @@ -5,7 +5,7 @@ djangorestframework==3.15.2 django-filter==24.3 django-genomix==1.1.0 -django-model-utils==3.2.0 +django-model-utils==5.0.0 mysqlclient==1.4.4 tqdm==4.37.0 From 49594d38722ff41e87860fe3c6116c634c39023e Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:06 -0500 Subject: [PATCH 04/22] Update mysqlclient from 1.4.4 to 2.2.6 --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index fb6003db..95754979 100644 --- a/requirements.txt +++ b/requirements.txt @@ -7,5 +7,5 @@ django-filter==24.3 django-genomix==1.1.0 django-model-utils==5.0.0 -mysqlclient==1.4.4 +mysqlclient==2.2.6 tqdm==4.37.0 From 9e4192b688d7dbf4109cd141acdaaa78436fc491 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:07 -0500 Subject: [PATCH 05/22] Update tqdm from 4.37.0 to 4.67.1 --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 95754979..6330568f 100644 --- a/requirements.txt +++ b/requirements.txt @@ -8,4 +8,4 @@ django-genomix==1.1.0 django-model-utils==5.0.0 mysqlclient==2.2.6 -tqdm==4.37.0 +tqdm==4.67.1 From e3db19dd1bff11e65c2614848457bd763271751b Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:08 -0500 Subject: [PATCH 06/22] Update bumpversion from 0.5.3 to 0.6.0 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index a794df9e..8ef8bcf2 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -1,7 +1,7 @@ -r requirements.txt -r requirements_test.txt -bumpversion==0.5.3 +bumpversion==0.6.0 wheel==0.33.6 twine==2.0.0 From a654b275a5e9afbb73ee01f3b231d1cf49067585 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:08 -0500 Subject: [PATCH 07/22] Update wheel from 0.33.6 to 0.45.1 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 8ef8bcf2..7ccb18bc 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -2,7 +2,7 @@ -r requirements_test.txt bumpversion==0.6.0 -wheel==0.33.6 +wheel==0.45.1 twine==2.0.0 # Docs requirements From 8332d5b9af4851d8896f7a25f78be2e8d470fc67 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:09 -0500 Subject: [PATCH 08/22] Update twine from 2.0.0 to 6.0.1 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 7ccb18bc..441b8354 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -3,7 +3,7 @@ bumpversion==0.6.0 wheel==0.45.1 -twine==2.0.0 +twine==6.0.1 # Docs requirements Sphinx==2.2.1 From ae04609f0d15e581eabf4c0be365164ef3f0ccc9 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:09 -0500 Subject: [PATCH 09/22] Update sphinx from 2.2.1 to 8.1.3 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 441b8354..0f69ca33 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -6,7 +6,7 @@ wheel==0.45.1 twine==6.0.1 # Docs requirements -Sphinx==2.2.1 +Sphinx==8.1.3 sphinx-rtd-theme==0.4.3 sphinxcontrib-napoleon==0.7 From 9f99b9cda2be4894851db5be350d89d0e82f74f0 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:10 -0500 Subject: [PATCH 10/22] Update sphinx-rtd-theme from 0.4.3 to 3.0.2 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 0f69ca33..0914c958 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -7,7 +7,7 @@ twine==6.0.1 # Docs requirements Sphinx==8.1.3 -sphinx-rtd-theme==0.4.3 +sphinx-rtd-theme==3.0.2 sphinxcontrib-napoleon==0.7 autopep8==1.4.4 From 7028c1a3ebce40154654513a2295a5e40abe89c8 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:11 -0500 Subject: [PATCH 11/22] Update autopep8 from 1.4.4 to 2.3.1 --- requirements_dev.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_dev.txt b/requirements_dev.txt index 0914c958..ff008f9b 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -10,4 +10,4 @@ Sphinx==8.1.3 sphinx-rtd-theme==3.0.2 sphinxcontrib-napoleon==0.7 -autopep8==1.4.4 +autopep8==2.3.1 From 14007103f99b35207c6f42785425c635a089e7ec Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:12 -0500 Subject: [PATCH 12/22] Update coverage from 4.5.4 to 7.6.8 --- requirements_test.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_test.txt b/requirements_test.txt index d4aef346..835d4bd6 100644 --- a/requirements_test.txt +++ b/requirements_test.txt @@ -1,4 +1,4 @@ -coverage==4.5.4 +coverage==7.6.8 mock==3.0.5 flake8==3.7.9 tox==3.14.0 From c5038d091d9cdda558aa376a2fcf6b6f0aebfd00 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:12 -0500 Subject: [PATCH 13/22] Update mock from 3.0.5 to 5.1.0 --- requirements_test.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_test.txt b/requirements_test.txt index 835d4bd6..3948157a 100644 --- a/requirements_test.txt +++ b/requirements_test.txt @@ -1,5 +1,5 @@ coverage==7.6.8 -mock==3.0.5 +mock==5.1.0 flake8==3.7.9 tox==3.14.0 codecov==2.0.15 From 79f0a8176b7021063439ee501045c7b25bfa1a48 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:13 -0500 Subject: [PATCH 14/22] Update flake8 from 3.7.9 to 7.1.1 --- requirements_test.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_test.txt b/requirements_test.txt index 3948157a..adc66837 100644 --- a/requirements_test.txt +++ b/requirements_test.txt @@ -1,6 +1,6 @@ coverage==7.6.8 mock==5.1.0 -flake8==3.7.9 +flake8==7.1.1 tox==3.14.0 codecov==2.0.15 From 4688601bf6b77e35103539275bb3a55fdb3ed6de Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:14 -0500 Subject: [PATCH 15/22] Update tox from 3.14.0 to 4.23.2 --- requirements_test.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_test.txt b/requirements_test.txt index adc66837..93bf0333 100644 --- a/requirements_test.txt +++ b/requirements_test.txt @@ -1,7 +1,7 @@ coverage==7.6.8 mock==5.1.0 flake8==7.1.1 -tox==3.14.0 +tox==4.23.2 codecov==2.0.15 From 46ddd36b82e5b5aa9a53cfe7feba72b786a59741 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:14 -0500 Subject: [PATCH 16/22] Update codecov from 2.0.15 to 2.1.13 --- requirements_test.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_test.txt b/requirements_test.txt index 93bf0333..3e005227 100644 --- a/requirements_test.txt +++ b/requirements_test.txt @@ -2,7 +2,7 @@ coverage==7.6.8 mock==5.1.0 flake8==7.1.1 tox==4.23.2 -codecov==2.0.15 +codecov==2.1.13 # Additional test requirements go here From 559788130494ade24545f2d5614f75f9fc9b75de Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:15 -0500 Subject: [PATCH 17/22] Update pytest from 5.2.2 to 8.3.4 --- requirements_test.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_test.txt b/requirements_test.txt index 3e005227..47feda7a 100644 --- a/requirements_test.txt +++ b/requirements_test.txt @@ -7,7 +7,7 @@ codecov==2.1.13 # Additional test requirements go here -pytest==5.2.2 +pytest==8.3.4 pytest-cov==2.8.1 pytest-django==3.6.0 pytest-sugar==0.9.2 From 24704c2803418bfbb1b406d673ed88ebdbadb396 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:16 -0500 Subject: [PATCH 18/22] Update pytest-cov from 2.8.1 to 6.0.0 --- requirements_test.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_test.txt b/requirements_test.txt index 47feda7a..8955df85 100644 --- a/requirements_test.txt +++ b/requirements_test.txt @@ -8,7 +8,7 @@ codecov==2.1.13 # Additional test requirements go here pytest==8.3.4 -pytest-cov==2.8.1 +pytest-cov==6.0.0 pytest-django==3.6.0 pytest-sugar==0.9.2 django-coverage-plugin==1.6.0 From b7ae4936f22016903e04ccb8529bfca4c869a571 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:17 -0500 Subject: [PATCH 19/22] Update pytest-django from 3.6.0 to 4.9.0 --- requirements_test.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_test.txt b/requirements_test.txt index 8955df85..198b3fe3 100644 --- a/requirements_test.txt +++ b/requirements_test.txt @@ -9,7 +9,7 @@ codecov==2.1.13 pytest==8.3.4 pytest-cov==6.0.0 -pytest-django==3.6.0 +pytest-django==4.9.0 pytest-sugar==0.9.2 django-coverage-plugin==1.6.0 django-test-plus==1.3.1 From a45cd24add751b944668dde3eda1b3caa268835a Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:17 -0500 Subject: [PATCH 20/22] Update pytest-sugar from 0.9.2 to 1.0.0 --- requirements_test.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_test.txt b/requirements_test.txt index 198b3fe3..533eb87e 100644 --- a/requirements_test.txt +++ b/requirements_test.txt @@ -10,7 +10,7 @@ codecov==2.1.13 pytest==8.3.4 pytest-cov==6.0.0 pytest-django==4.9.0 -pytest-sugar==0.9.2 +pytest-sugar==1.0.0 django-coverage-plugin==1.6.0 django-test-plus==1.3.1 model-mommy==2.0.0 From ad2ee98019a2808d87ad7040de4df0c7af2d1e66 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:18 -0500 Subject: [PATCH 21/22] Update django-coverage-plugin from 1.6.0 to 3.1.0 --- requirements_test.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_test.txt b/requirements_test.txt index 533eb87e..82f1150f 100644 --- a/requirements_test.txt +++ b/requirements_test.txt @@ -11,6 +11,6 @@ pytest==8.3.4 pytest-cov==6.0.0 pytest-django==4.9.0 pytest-sugar==1.0.0 -django-coverage-plugin==1.6.0 +django-coverage-plugin==3.1.0 django-test-plus==1.3.1 model-mommy==2.0.0 From 37b02fb4ad0b63e97dfd5e910b9b892444add87b Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 2 Dec 2024 09:40:19 -0500 Subject: [PATCH 22/22] Update django-test-plus from 1.3.1 to 2.2.4 --- requirements_test.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements_test.txt b/requirements_test.txt index 82f1150f..b0d49fe9 100644 --- a/requirements_test.txt +++ b/requirements_test.txt @@ -12,5 +12,5 @@ pytest-cov==6.0.0 pytest-django==4.9.0 pytest-sugar==1.0.0 django-coverage-plugin==3.1.0 -django-test-plus==1.3.1 +django-test-plus==2.2.4 model-mommy==2.0.0