Install Error: "force was not installed properly!"

[dkczk]

Hey guys, I tried to install FORCE on Ubuntu 20.04. I strictly followed the installation cookbook, enabled Splits (steps a to c in the installation guide) and did $ make -j and $ sudo make install. When executing the latter I get the following block of code:

mkdir -p temp-bin temp-bin/force-misc temp-cross temp-lower temp-higher temp-aux
cp bash/force-cube.sh temp-bin/force-cube
cp bash/force-l2ps_.sh temp-bin/force-l2ps_
cp bash/force-level1-csd.sh temp-bin/force-level1-csd  
cp bash/force-level1-landsat.sh temp-bin/force-level1-landsat
cp bash/force-level1-sentinel2.sh temp-bin/force-level1-sentinel2
cp bash/force-level2.sh temp-bin/force-level2
cp bash/force-mosaic.sh temp-bin/force-mosaic
cp bash/force-pyramid.sh temp-bin/force-pyramid
cp bash/force-procmask.sh temp-bin/force-procmask
cp bash/force-tile-extent.sh temp-bin/force-tile-extent
cp bash/force-magic-parameters.sh temp-bin/force-magic-parameters
cp bash/force-level2-report.sh temp-bin/force-level2-report
cp python/force-synthmix.py temp-bin/force-synthmix
cp rstats/force-level2-report.Rmd temp-bin/force-misc/force-level2-report.Rmd
chmod 0755 temp-bin/*
cp -a temp-bin/. /usr/local/bin
rm -rf temp-bin temp-cross temp-lower temp-higher temp-aux 
Makefile:428: *** force was not installed properly!.  Stop.

I can't remember exactly how it should look like in case of a successful install, but I think until the "Makefile:428: *** force was not installed properly!. Stop." line everything is fine. I guess the 428 refers to a specific line in the Makefile. I think line 428 checks the existence(?) of all force executables. So I checked the install directory (/usr/local/bin) and it seems that some force apps are missing (list below) e.g. force-parameter.
What went wrong here and how can I fix it?

Thanks in advance and kind regards.

FORCE execs in /usr/local/bin: force-cube, force-level1-sentinel2, force-synthmix, force-l2ps_, force-level2, force-mosaic, force-tile-extent, force-level1-csd, force-level2-report, force-procmasc, force-level1-landsat, force-magic-parameters, force-pyramid

[davidfrantz]

Hi @dkczk,

all the compiled programs are missing... What did make -j do?

Cheers,
David

[dkczk]

Wall of text below:

mkdir -p temp-bin temp-bin/force-misc temp-cross temp-lower temp-higher temp-aux
gcc -O3 -Wall -fopenmp -c src/cross-level/string-cl.c -o temp-cross/string_cl.o
gcc -O3 -Wall -fopenmp -c src/cross-level/enum-cl.c -o temp-cross/enum_cl.o
gcc -O3 -Wall -fopenmp -c src/cross-level/cite-cl.c -o temp-cross/cite_cl.o
gcc -O3 -Wall -fopenmp -c src/cross-level/utils-cl.c -o temp-cross/utils_cl.o -lm
gcc -O3 -Wall -fopenmp -c src/cross-level/alloc-cl.c -o temp-cross/alloc_cl.o
g++ -std=c++11 -O3 -Wall -fopenmp -I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib -c src/cross-level/brick-cl.c -o temp-cross/brick_cl.o -lgdal
gcc -O3 -Wall -fopenmp -c src/cross-level/imagefuns-cl.c -o temp-cross/imagefuns_cl.o
gcc -O3 -Wall -fopenmp -c src/cross-level/param-cl.c -o temp-cross/param_cl.o
gcc -O3 -Wall -fopenmp -c src/cross-level/date-cl.c -o temp-cross/date_cl.o
gcc -O3 -Wall -fopenmp -c src/cross-level/datesys-cl.c -o temp-cross/datesys_cl.o
gcc -O3 -Wall -fopenmp -I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib -c src/cross-level/lock-cl.c -o temp-cross/lock_cl.o -lgdal
gcc -O3 -Wall -fopenmp -c src/cross-level/cube-cl.c -o temp-cross/cube_cl.o
gcc -O3 -Wall -fopenmp -c src/cross-level/dir-cl.c -o temp-cross/dir_cl.o
gcc -O3 -Wall -fopenmp -c src/cross-level/stats-cl.c -o temp-cross/stats_cl.o
gcc -O3 -Wall -fopenmp -I/usr/include/gsl -L/usr/lib/x86_64-linux-gnu -Wl,-rpath=/usr/lib/x86_64-linux-gnu -DHAVE_INLINE=1 -DGSL_RANGE_CHECK=0 -c src/cross-level/pca-cl.c -o temp-cross/pca_cl.o -lgsl -lgslcblas
gcc -O3 -Wall -fopenmp -I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib -c src/cross-level/tile-cl.c -o temp-cross/tile_cl.o -lgdal
gcc -O3 -Wall -fopenmp -c src/cross-level/queue-cl.c -o temp-cross/queue_cl.o
g++ -std=c++11 -O3 -Wall -fopenmp -I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib -c src/cross-level/warp-cl.cpp -o temp-cross/warp_cl.o -lgdal
gcc -O3 -Wall -fopenmp -c src/cross-level/sun-cl.c -o temp-cross/sun_cl.o
gcc -O3 -Wall -fopenmp -c src/cross-level/quality-cl.c -o temp-cross/quality_cl.o
gcc -O3 -Wall -fopenmp -c src/cross-level/sys-cl.c -o temp-cross/sys_cl.o
gcc -O3 -Wall -fopenmp -c src/cross-level/konami-cl.c -o temp-cross/konami_cl.o
gcc -O3 -Wall -fopenmp -I/usr/include/curl -L/usr/lib/x86_64-linux-gnu -Wl,-rpath=/usr/lib/x86_64-linux-gnu -I/usr/include/x86_64-linux-gnu/curl -L/usr/lib/x86_64-linux-gnu -Wl,-rpath=/usr/lib/x86_64-linux-gnu -c src/cross-level/download-cl.c -o temp-cross/download_cl.o -lcurl
gcc -O3 -Wall -fopenmp -c src/cross-level/read-cl.c -o temp-cross/read_cl.o
gcc -O3 -Wall -fopenmp -c src/lower-level/table-ll.c -o temp-lower/table_ll.o
gcc -O3 -Wall -fopenmp -c src/lower-level/param-ll.c -o temp-lower/param_ll.o
gcc -O3 -Wall -fopenmp -I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib -c src/lower-level/meta-ll.c -o temp-lower/meta_ll.o -lgdal
gcc -O3 -Wall -fopenmp -c src/lower-level/cube-ll.c -o temp-lower/cube_ll.o
gcc -O3 -Wall -fopenmp -c src/lower-level/equi7-ll.c -o temp-lower/equi7_ll.o
gcc -O3 -Wall -fopenmp -c src/lower-level/glance7-ll.c -o temp-lower/glance7_ll.o
gcc -O3 -Wall -fopenmp -c src/lower-level/atc-ll.c -o temp-lower/atc.o
gcc -O3 -Wall -fopenmp -c src/lower-level/sunview-ll.c -o temp-lower/sunview.o
gcc -O3 -Wall -fopenmp -I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib -c src/lower-level/read-ll.c -o temp-lower/read.o -lgdal
gcc -O3 -Wall -fopenmp -c src/lower-level/radtran-ll.c -o temp-lower/radtran_ll.o
gcc -O3 -Wall -fopenmp -c src/lower-level/topo-ll.c -o temp-lower/topo_ll.o
gcc -O3 -Wall -fopenmp -c src/lower-level/cloud-ll.c -o temp-lower/cloud_ll.o
gcc -O3 -Wall -fopenmp -I/usr/include/gsl -L/usr/lib/x86_64-linux-gnu -Wl,-rpath=/usr/lib/x86_64-linux-gnu -DHAVE_INLINE=1 -DGSL_RANGE_CHECK=0 -c src/lower-level/gas-ll.c -o temp-lower/gas_ll.o -lgsl -lgslcblas
gcc -O3 -Wall -fopenmp -c src/lower-level/brdf-ll.c -o temp-lower/brdf_ll.o
src/lower-level/topo-ll.c: In function ‘cfactor_topography’:
src/lower-level/topo-ll.c:817:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  817 |   for (k=0; k<nk; k++) printf("%d ", K[k]); printf("\n");
      |   ^~~
src/lower-level/topo-ll.c:817:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  817 |   for (k=0; k<nk; k++) printf("%d ", K[k]); printf("\n");
      |                                             ^~~~~~
gcc -O3 -Wall -fopenmp -I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib -c src/lower-level/atmo-ll.c -o temp-lower/atmo_ll.o -lgdal
gcc -O3 -Wall -fopenmp -I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib -I/usr/include/gsl -L/usr/lib/x86_64-linux-gnu -Wl,-rpath=/usr/lib/x86_64-linux-gnu -DHAVE_INLINE=1 -DGSL_RANGE_CHECK=0 -c src/lower-level/aod-ll.c -o temp-lower/aod_ll.o -lgdal -lgsl -lgslcblas
gcc -O3 -Wall -fopenmp -I/usr/include/gsl -L/usr/lib/x86_64-linux-gnu -Wl,-rpath=/usr/lib/x86_64-linux-gnu -DHAVE_INLINE=1 -DGSL_RANGE_CHECK=0 -c src/lower-level/resmerge-ll.c -o temp-lower/resmerge_ll.o -lgsl -lgslcblas
gcc -O3 -Wall -fopenmp -c src/lower-level/coreg-ll.c -o temp-lower/coreg_ll.o
gcc -O3 -Wall -fopenmp -c src/lower-level/coregfuns-ll.c -o temp-lower/coregfuns_ll.o
gcc -O3 -Wall -fopenmp -c src/lower-level/acix-ll.c -o temp-lower/acix_ll.o
gcc -O3 -Wall -fopenmp -I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib -c src/lower-level/modwvp-ll.c -o temp-lower/modwvp_ll.o -lgdal
gcc -O3 -Wall -fopenmp -c src/higher-level/param-hl.c -o temp-higher/param_hl.o
gcc -O3 -Wall -fopenmp -c src/higher-level/progress-hl.c -o temp-higher/progress_hl.o
g++ -std=c++11 -O3 -Wall -fopenmp -I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib -I/usr/local/include/opencv4 -L/usr/local/lib -Wl,-rpath=/usr/local/lib -c src/higher-level/tasks-hl.c -o temp-higher/tasks_hl.o -lgdal -lopencv_core -lopencv_ml -lopencv_imgproc
g++ -std=c++11 -O3 -Wall -fopenmp -I/usr/local/include/opencv4 -L/usr/local/lib -Wl,-rpath=/usr/local/lib -c src/higher-level/read-aux-hl.c -o temp-higher/read-aux_hl.o -lopencv_core -lopencv_ml -lopencv_imgproc
gcc -O3 -Wall -fopenmp -I/usr/include/gdal -L/usr/lib -Wl,-rpath=/usr/lib -c src/higher-level/read-ard-hl.c -o temp-higher/read-ard_hl.o -lgdal
gcc -O3 -Wall -fopenmp -c src/higher-level/quality-hl.c -o temp-higher/quality_hl.o
gcc -O3 -Wall -fopenmp -I/usr/include/gsl -L/usr/lib/x86_64-linux-gnu -Wl,-rpath=/usr/lib/x86_64-linux-gnu -DHAVE_INLINE=1 -DGSL_RANGE_CHECK=0 -c src/higher-level/bap-hl.c -o temp-higher/bap_hl.o -lgsl -lgslcblas
gcc -O3 -Wall -fopenmp -c src/higher-level/level3-hl.c -o temp-higher/level3_hl.o
gcc -O3 -Wall -fopenmp -c src/higher-level/cso-hl.c -o temp-higher/cso_hl.o
gcc -O3 -Wall -fopenmp -c src/higher-level/tsa-hl.c -o temp-higher/tsa_hl.o
gcc -O3 -Wall -fopenmp -I/usr/include/gsl -L/usr/lib/x86_64-linux-gnu -Wl,-rpath=/usr/lib/x86_64-linux-gnu -DHAVE_INLINE=1 -DGSL_RANGE_CHECK=0 -c src/higher-level/index-hl.c -o temp-higher/index_hl.o -lgsl -lgslcblas
gcc -O3 -Wall -fopenmp -c src/higher-level/interpolate-hl.c -o temp-higher/interpolate_hl.o
gcc -O3 -Wall -fopenmp -c src/higher-level/stm-hl.c -o temp-higher/stm_hl.o
gcc -O3 -Wall -fopenmp -c src/higher-level/fold-hl.c -o temp-higher/fold_hl.o
gcc -O3 -Wall -fopenmp -c src/higher-level/standardize-hl.c -o temp-higher/standardize_hl.o
In file included from /usr/include/string.h:495,
                 from src/lower-level/../cross-level/string-cl.h:33,
                 from src/lower-level/modwvp-ll.h:36,
                 from src/lower-level/modwvp-ll.c:28:
In function ‘strncpy’,
    inlined from ‘compile_modis_wvp’ at src/lower-level/modwvp-ll.c:619:7:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 5 bytes from a string of the same length [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O3 -Wall -fopenmp -I/usr/local/include/splits -L/usr/local/lib -Wl,-rpath=/usr/local/lib -c src/higher-level/pheno-hl.cpp -o temp-higher/pheno_hl.o -lsplits -larmadillo
gcc -O3 -Wall -fopenmp -c src/higher-level/polar-hl.c -o temp-higher/polar_hl.o
gcc -O3 -Wall -fopenmp -c src/higher-level/trend-hl.c -o temp-higher/trend_hl.o
g++ -std=c++11 -O3 -Wall -fopenmp -I/usr/local/include/opencv4 -L/usr/local/lib -Wl,-rpath=/usr/local/lib -c src/higher-level/ml-hl.c -o temp-higher/ml_hl.o -lopencv_core -lopencv_ml -lopencv_imgproc
src/cross-level/warp-cl.cpp: In function ‘int warp_geo_to_any(double, double, double*, double*, char*)’:
src/cross-level/warp-cl.cpp:64:29: warning: ‘OGRErr OGRSpatialReference::importFromWkt(char**)’ is deprecated [-Wdeprecated-declarations]
   64 |   oDstSRS.importFromWkt(&wkt);
      |                             ^
In file included from src/cross-level/warp-cl.cpp:33:
/usr/include/gdal/ogr_spatialref.h:208:17: note: declared here
  208 |     OGRErr      importFromWkt( char ** )
      |                 ^~~~~~~~~~~~~
src/cross-level/warp-cl.cpp: In function ‘int warp_any_to_geo(double, double, double*, double*, char*)’:
src/cross-level/warp-cl.cpp:102:29: warning: ‘OGRErr OGRSpatialReference::importFromWkt(char**)’ is deprecated [-Wdeprecated-declarations]
  102 |   oSrcSRS.importFromWkt(&wkt);
      |                             ^
In file included from src/cross-level/warp-cl.cpp:33:
/usr/include/gdal/ogr_spatialref.h:208:17: note: declared here
  208 |     OGRErr      importFromWkt( char ** )
      |                 ^~~~~~~~~~~~~
src/cross-level/warp-cl.cpp: In function ‘int warp_any_to_any(double, double, double*, double*, char*, char*)’:
src/cross-level/warp-cl.cpp:148:33: warning: ‘OGRErr OGRSpatialReference::importFromWkt(char**)’ is deprecated [-Wdeprecated-declarations]
  148 |   oSrcSRS.importFromWkt(&src_css);
      |                                 ^
In file included from src/cross-level/warp-cl.cpp:33:
/usr/include/gdal/ogr_spatialref.h:208:17: note: declared here
  208 |     OGRErr      importFromWkt( char ** )
      |                 ^~~~~~~~~~~~~
src/cross-level/warp-cl.cpp:149:33: warning: ‘OGRErr OGRSpatialReference::importFromWkt(char**)’ is deprecated [-Wdeprecated-declarations]
  149 |   oDstSRS.importFromWkt(&dst_css);
      |                                 ^
In file included from src/cross-level/warp-cl.cpp:33:
/usr/include/gdal/ogr_spatialref.h:208:17: note: declared here
  208 |     OGRErr      importFromWkt( char ** )
      |                 ^~~~~~~~~~~~~
g++ -std=c++11 -O3 -Wall -fopenmp -I/usr/local/include/opencv4 -L/usr/local/lib -Wl,-rpath=/usr/local/lib -c src/higher-level/texture-hl.c -o temp-higher/texture_hl.o -lopencv_core -lopencv_ml -lopencv_imgproc
gcc -O3 -Wall -fopenmp -c src/higher-level/lsm-hl.c -o temp-higher/lsm_hl.o
src/higher-level/read-ard-hl.c: In function ‘list_ard’:
src/higher-level/read-ard-hl.c:344:18: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=]
  344 |   printf("found %d files, filtering now\n");
      |                 ~^
      |                  |
      |                  int
gcc -O3 -Wall -fopenmp -I/usr/local/include/opencv4 -L/usr/local/lib -Wl,-rpath=/usr/local/lib -c src/higher-level/lib-hl.c -o temp-higher/lib_hl.o
g++ -std=c++11 -O3 -Wall -fopenmp -c src/higher-level/sample-hl.c -o temp-higher/sample_hl.o
gcc -O3 -Wall -fopenmp -c src/higher-level/improphe-hl.c -o temp-higher/imp_hl.o
gcc -O3 -Wall -fopenmp -c src/higher-level/cf-improphe-hl.c -o temp-higher/cfimp_hl.o
gcc -O3 -Wall -fopenmp -c src/higher-level/l2-improphe-hl.c -o temp-higher/l2imp_hl.o
src/higher-level/pheno-hl.cpp:33:10: fatal error: splits.h: No such file or directory
   33 | #include <splits.h>
      |          ^~~~~~~~~~
compilation terminated.
gcc -O3 -Wall -fopenmp -c src/higher-level/spec-adjust-hl.c -o temp-higher/spec-adjust_hl.o
make: *** [Makefile:305: pheno_hl] Error 1
make: *** Waiting for unfinished jobs....
In file included from /usr/include/string.h:495,
                 from src/higher-level/../cross-level/string-cl.h:33,
                 from src/higher-level/read-ard-hl.h:35,
                 from src/higher-level/read-ard-hl.c:28:
In function ‘strncpy’,
    inlined from ‘add_blocks.constprop’ at src/higher-level/read-ard-hl.c:1426:14:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 15 [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘read_ard._omp_fn.0’ at src/higher-level/read-ard-hl.c:884:7:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 3 bytes from a string of the same length [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘read_ard._omp_fn.0’ at src/higher-level/read-ard-hl.c:909:7:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 3 bytes from a string of the same length [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘read_ard._omp_fn.0’ at src/higher-level/read-ard-hl.c:926:35:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 3 bytes from a string of the same length [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘read_ard._omp_fn.0’ at src/higher-level/read-ard-hl.c:942:35:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 3 bytes from a string of the same length [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘read_ard._omp_fn.0’ at src/higher-level/read-ard-hl.c:958:35:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 3 bytes from a string of the same length [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘read_ard._omp_fn.0’ at src/higher-level/read-ard-hl.c:887:30:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 3 bytes from a string of the same length [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘read_ard._omp_fn.0’ at src/higher-level/read-ard-hl.c:850:48:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 3 bytes from a string of the same length [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘read_ard._omp_fn.0’ at src/higher-level/read-ard-hl.c:850:19:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 3 bytes from a string of the same length [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘read_ard._omp_fn.0’ at src/higher-level/read-ard-hl.c:822:9:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 3 bytes from a string of the same length [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncpy’,
    inlined from ‘add_blocks’ at src/higher-level/read-ard-hl.c:1426:14:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 15 [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/higher-level/texture-hl.c: In function ‘brick_t** compile_txt(ard_t*, txt_t*, par_hl_t*, cube_t*, int*)’:
src/higher-level/texture-hl.c:62:30: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::oero’ from ‘int’ to ‘bool’ [-Wnarrowing]
   62 | bool enable[7] = {  phl->txt.oero, phl->txt.odil, phl->txt.oopn, phl->txt.ocls,
      |                     ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:62:45: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::odil’ from ‘int’ to ‘bool’ [-Wnarrowing]
   62 | bool enable[7] = {  phl->txt.oero, phl->txt.odil, phl->txt.oopn, phl->txt.ocls,
      |                                    ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:62:60: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::oopn’ from ‘int’ to ‘bool’ [-Wnarrowing]
   62 | bool enable[7] = {  phl->txt.oero, phl->txt.odil, phl->txt.oopn, phl->txt.ocls,
      |                                                   ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:62:75: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::ocls’ from ‘int’ to ‘bool’ [-Wnarrowing]
   62 | bool enable[7] = {  phl->txt.oero, phl->txt.odil, phl->txt.oopn, phl->txt.ocls,
      |                                                                  ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:63:30: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::ogrd’ from ‘int’ to ‘bool’ [-Wnarrowing]
   63 |                     phl->txt.ogrd, phl->txt.otht, phl->txt.obht };
      |                     ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:63:45: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::otht’ from ‘int’ to ‘bool’ [-Wnarrowing]
   63 |                     phl->txt.ogrd, phl->txt.otht, phl->txt.obht };
      |                                    ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:63:60: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::obht’ from ‘int’ to ‘bool’ [-Wnarrowing]
   63 |                     phl->txt.ogrd, phl->txt.otht, phl->txt.obht };
      |                                                   ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:65:29: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::oero’ from ‘int’ to ‘bool’ [-Wnarrowing]
   65 | bool write[7]  = { phl->txt.oero, phl->txt.odil, phl->txt.oopn, phl->txt.ocls,
      |                    ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:65:44: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::odil’ from ‘int’ to ‘bool’ [-Wnarrowing]
   65 | bool write[7]  = { phl->txt.oero, phl->txt.odil, phl->txt.oopn, phl->txt.ocls,
      |                                   ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:65:59: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::oopn’ from ‘int’ to ‘bool’ [-Wnarrowing]
   65 | bool write[7]  = { phl->txt.oero, phl->txt.odil, phl->txt.oopn, phl->txt.ocls,
      |                                                  ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:65:74: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::ocls’ from ‘int’ to ‘bool’ [-Wnarrowing]
   65 | bool write[7]  = { phl->txt.oero, phl->txt.odil, phl->txt.oopn, phl->txt.ocls,
      |                                                                 ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:66:29: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::ogrd’ from ‘int’ to ‘bool’ [-Wnarrowing]
   66 |                    phl->txt.ogrd, phl->txt.otht, phl->txt.obht };
      |                    ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:66:44: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::otht’ from ‘int’ to ‘bool’ [-Wnarrowing]
   66 |                    phl->txt.ogrd, phl->txt.otht, phl->txt.obht };
      |                                   ~~~~~~~~~^~~~
src/higher-level/texture-hl.c:66:59: warning: narrowing conversion of ‘phl->par_hl_t::txt.par_txt_t::obht’ from ‘int’ to ‘bool’ [-Wnarrowing]
   66 |                    phl->txt.ogrd, phl->txt.otht, phl->txt.obht };
      |                                                  ~~~~~~~~~^~~~
src/higher-level/ml-hl.c: In function ‘brick_t** compile_ml(ard_t*, ml_t*, par_hl_t*, cube_t*, int*)’:
src/higher-level/ml-hl.c:60:29: warning: narrowing conversion of ‘phl->par_hl_t::mcl.par_mcl_t::omlp’ from ‘int’ to ‘bool’ [-Wnarrowing]
   60 | bool enable[5] = { phl->mcl.omlp, phl->mcl.omli, phl->mcl.omlu, phl->mcl.orfp, phl->mcl.orfm };
      |                    ~~~~~~~~~^~~~
src/higher-level/ml-hl.c:60:44: warning: narrowing conversion of ‘phl->par_hl_t::mcl.par_mcl_t::omli’ from ‘int’ to ‘bool’ [-Wnarrowing]
   60 | bool enable[5] = { phl->mcl.omlp, phl->mcl.omli, phl->mcl.omlu, phl->mcl.orfp, phl->mcl.orfm };
      |                                   ~~~~~~~~~^~~~
src/higher-level/ml-hl.c:60:59: warning: narrowing conversion of ‘phl->par_hl_t::mcl.par_mcl_t::omlu’ from ‘int’ to ‘bool’ [-Wnarrowing]
   60 | bool enable[5] = { phl->mcl.omlp, phl->mcl.omli, phl->mcl.omlu, phl->mcl.orfp, phl->mcl.orfm };
      |                                                  ~~~~~~~~~^~~~
src/higher-level/ml-hl.c:60:74: warning: narrowing conversion of ‘phl->par_hl_t::mcl.par_mcl_t::orfp’ from ‘int’ to ‘bool’ [-Wnarrowing]
   60 | bool enable[5] = { phl->mcl.omlp, phl->mcl.omli, phl->mcl.omlu, phl->mcl.orfp, phl->mcl.orfm };
      |                                                                 ~~~~~~~~~^~~~
src/higher-level/ml-hl.c:60:89: warning: narrowing conversion of ‘phl->par_hl_t::mcl.par_mcl_t::orfm’ from ‘int’ to ‘bool’ [-Wnarrowing]
   60 | bool enable[5] = { phl->mcl.omlp, phl->mcl.omli, phl->mcl.omlu, phl->mcl.orfp, phl->mcl.orfm };
      |                                                                                ~~~~~~~~~^~~~
src/higher-level/ml-hl.c:61:29: warning: narrowing conversion of ‘phl->par_hl_t::mcl.par_mcl_t::omlp’ from ‘int’ to ‘bool’ [-Wnarrowing]
   61 | bool write[5]  = { phl->mcl.omlp, phl->mcl.omli, phl->mcl.omlu, phl->mcl.orfp, phl->mcl.orfm };
      |                    ~~~~~~~~~^~~~
src/higher-level/ml-hl.c:61:44: warning: narrowing conversion of ‘phl->par_hl_t::mcl.par_mcl_t::omli’ from ‘int’ to ‘bool’ [-Wnarrowing]
   61 | bool write[5]  = { phl->mcl.omlp, phl->mcl.omli, phl->mcl.omlu, phl->mcl.orfp, phl->mcl.orfm };
      |                                   ~~~~~~~~~^~~~
src/higher-level/ml-hl.c:61:59: warning: narrowing conversion of ‘phl->par_hl_t::mcl.par_mcl_t::omlu’ from ‘int’ to ‘bool’ [-Wnarrowing]
   61 | bool write[5]  = { phl->mcl.omlp, phl->mcl.omli, phl->mcl.omlu, phl->mcl.orfp, phl->mcl.orfm };
      |                                                  ~~~~~~~~~^~~~
src/higher-level/ml-hl.c:61:74: warning: narrowing conversion of ‘phl->par_hl_t::mcl.par_mcl_t::orfp’ from ‘int’ to ‘bool’ [-Wnarrowing]
   61 | bool write[5]  = { phl->mcl.omlp, phl->mcl.omli, phl->mcl.omlu, phl->mcl.orfp, phl->mcl.orfm };
      |                                                                 ~~~~~~~~~^~~~
src/higher-level/ml-hl.c:61:89: warning: narrowing conversion of ‘phl->par_hl_t::mcl.par_mcl_t::orfm’ from ‘int’ to ‘bool’ [-Wnarrowing]
   61 | bool write[5]  = { phl->mcl.omlp, phl->mcl.omli, phl->mcl.omlu, phl->mcl.orfp, phl->mcl.orfm };
      |                                                                                ~~~~~~~~~^~~~

[davidfrantz]

hmm,

Can you please run make without -j? When doing this, the script should run linearly and directly stops when an error occurs. The wall of text should become slightly more readable.
Can you also check the temp-bin folder after running make?

[dkczk]

src/higher-level/pheno-hl.cpp:33:10: fatal error: splits.h: No such file or directory
   33 | #include <splits.h>
      |          ^~~~~~~~~~
compilation terminated.
make: *** [Makefile:305: pheno_hl] Error 1

After running make there is only a folder force-misc which is empty.

[davidfrantz]

OK, the linker cannot find SPLITS.

I believe that there are several options to fix this.

1. Disable SPLITS in FORCE. Do you intend to use it? I thought about deprecating it because I believe it is rather unstable and less reliable than the polar-based phenometrics that were implemented in the meantime.
2. Install SPLITS again (try removing the --prefix option that is given in the install instructions)
3. In the FORCE Makefile (l. 36), provide the paths that were used when compiling/installing SPLITS
4. Use Docker or Apptainer/Singularity