mcp

MCP Module (Model Context Protocol)

METAINFORMANT tools exposed via Model Context Protocol for LLM-based development environments.

Overview

METAINFORMANT tools exposed via Model Context Protocol for LLM-based development environments.

Table of Contents

• Quick Start
  • Claude Desktop
  • Cursor
• Available Tools
• See Also

Quick Start

Claude Desktop

1. Install: uv pip install -e .
2. Create ~/.config/Claude/mcp_config.json:

{
  "mcpServers": {
    "metainformant": {
      "command": "uv",
      "args": ["run", "python", "-m", "metainformant.mcp.server"]
    }
  }
}

3. Restart Claude Desktop

Cursor

Settings → AI Agents → MCP Servers → Add:

• Command: uv
• Args: ["run", "python", "-m", "metainformant.mcp.server"]

Available Tools

Tool	Description	Status
amalgkit_status	Check RNA pipeline status for species	[DONE] Implemented
run_workflow	Trigger METAINFORMANT workflow	[PARTIAL]
list_outputs	List output files for module	[PLANNED]

See Also

• RNA Module — Amalgkit pipeline
• MCP SPEC — Technical API reference