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‎docs/citation.html‎

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<!DOCTYPE html>
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<html>
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<head>
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<title>Cite EzAAI</title>
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<meta charset="utf-8">
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<meta name="viewport"
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content="width=device-width, initial-scale=1, shrink-to-fit=no">
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<meta http-equiv="X-UA-Compatible" content="IE=edge">
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<link rel="shortcut icon" href="images/ezaai_logowork-16px.ico" type="image/x-icon">
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href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css"
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integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T"
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crossorigin="anonymous">
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crossorigin="anonymous"></script>
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integrity="sha384-UO2eT0CpHqdSJQ6hJty5KVphtPhzWj9WO1clHTMGa3JDZwrnQq4sF86dIHNDz0W1"
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crossorigin="anonymous"></script>
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<script
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src="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/js/bootstrap.min.js"
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integrity="sha384-JjSmVgyd0p3pXB1rRibZUAYoIIy6OrQ6VrjIEaFf/nJGzIxFDsf4x0xIM+B07jRM"
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crossorigin="anonymous"></script>
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<script>
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window.dataLayer = window.dataLayer || [];
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function gtag(){dataLayer.push(arguments);}
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gtag('js', new Date());
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gtag('config', 'G-9B3HSS9PWF');
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</script>
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<meta charset="EUC-KR">
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</head>
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<body style="padding-left:0;padding-right:0" class="jumbotron">
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<section>
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<div class="container" style="padding-top:5rem">
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<img src="images/ezaai_banner.svg" style="max-width:50%;margin-left:auto;margin-right:auto;height:auto;width:auto;display:block">
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<p><br><br></p>
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<p><b>Kim, D., Park, S. &amp; Chun, J.</b> Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity.
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<i>J. Microbiol </i><b>59</b>, 476-480 (2021).
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<a href="https://doi.org/10.1007/s12275-021-1154-0" target="_blank" rel="noopener"><img style="height:20px" src="https://link.springer.com/oscar-static/images/springerlink/svg/springerlink-6c9a864b59.svg"></a></p>
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</div>
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</section>
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<nav class="navbar navbar-expand-md navbar-dark fixed-top bg-dark">
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<div class="container">
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<div class="navbar-header">
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<a class="navbar-brand" href="/ezaai"><img src="images/ezaai_logowork-160px.svg" width="30"> EzAAI</a>
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</div>
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<button class="navbar-toggler" type="button" data-toggle="collapse"
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data-target="#navbarsExampleDefault"
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aria-controls="navbarsExampleDefault" aria-expanded="false"
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aria-label="Toggle navigation">
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<span class="navbar-toggler-icon"></span>
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</button>
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<div class="collapse navbar-collapse" id="navbarsExampleDefault">
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<ul class="navbar-nav mr-auto">
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<li class="nav-item"><a class="nav-link" href="/ezaai">Home</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/tutorial">Tutorial</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/download">Download</a></li>
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<li class="nav-item"><a class="nav-link" href="https://github.com/endixk/ezaai" target="_blank" rel="noopener noreferrer"><i class="fa fa-github"></i> GitHub</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/data">Data</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/citation">Cite us</a></li>
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</ul>
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</div>
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</div>
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</nav>
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<script>
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$(document).ready(function() {
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var pname = window.location.pathname;
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var phead = '/ezaai';
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if(pname.split('/').length > 2){
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phead = phead + '/' + pname.split('/')[2];
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}
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$('.navbar-nav > li > a[href="'+ phead +'"]').parent().addClass('active');
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})
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</script>
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<footer class="footer align-middle" style="padding:0 0;z-index:5">
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<p style="height:3rem; margin-top:1rem!important">&copy; <a class="a-footer" href="http://leb.snu.ac.kr/" target="_blank" rel="noopener noreferrer">Laboratory of Evolutionary Bioinformatics</a>, Seoul
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National University. 2021-</p>
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</footer>
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</body>
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</html>

‎docs/data.html‎

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<!DOCTYPE html>
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<html>
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<title>EzAAI - Data</title>
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<meta charset="utf-8">
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<meta name="viewport"
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content="width=device-width, initial-scale=1, shrink-to-fit=no">
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<meta http-equiv="X-UA-Compatible" content="IE=edge">
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<link rel="shortcut icon" href="images/ezaai_logowork-16px.ico" type="image/x-icon">
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<link rel="stylesheet" href="style.css">
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<link rel="stylesheet"
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href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css"
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integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T"
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crossorigin="anonymous">
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integrity="sha384-wvfXpqpZZVQGK6TAh5PVlGOfQNHSoD2xbE+QkPxCAFlNEevoEH3Sl0sibVcOQVnN"
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crossorigin="anonymous">
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<script src="https://code.jquery.com/jquery-3.3.1.slim.min.js"
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integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo"
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crossorigin="anonymous"></script>
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<script
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src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.7/umd/popper.min.js"
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integrity="sha384-UO2eT0CpHqdSJQ6hJty5KVphtPhzWj9WO1clHTMGa3JDZwrnQq4sF86dIHNDz0W1"
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crossorigin="anonymous"></script>
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<script
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src="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/js/bootstrap.min.js"
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integrity="sha384-JjSmVgyd0p3pXB1rRibZUAYoIIy6OrQ6VrjIEaFf/nJGzIxFDsf4x0xIM+B07jRM"
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crossorigin="anonymous"></script>
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<script>
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window.dataLayer = window.dataLayer || [];
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function gtag(){dataLayer.push(arguments);}
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gtag('js', new Date());
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gtag('config', 'G-9B3HSS9PWF');
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</script>
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<meta charset="EUC-KR">
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<style>
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.infobox {
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margin-bottom: 0rem;
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}
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.infoheader{
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padding-top: 1rem;
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padding-bottom: 2rem;
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}
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.btn-dlink{
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margin-bottom:0;
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padding:2px 5px;
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height:30px;
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}
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.req{
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font-size:85%;
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font-family:SFMono-Regular,Menlo,Monaco,Consolas,Liberation Mono,Courier New,monospace;
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line-height:1.5;
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}
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.req > li{
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margin-bottom:5px;
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}
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.btn-ufcg {
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}
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</style>
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</head>
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<body>
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<section class="body_section">
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<div class="container">
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<h1 class="infoheader">EzAAI - Data</h1>
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<h6>You can download the list of prokaryotic species that are used to estimate the accuracy and speed of our pipeline here.</h6>
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<hr>
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<p><i class="fa fa-download"></i> Actinobacteria - Species list (1,642 species, 73 kB)
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<a class="btn btn-secondary btn-ufcg" href="resources/data/Actinobacteria_species.tsv.zip" role="button" rel="noopener noreferrer" style="float:none;margin-top:0;margin-bottom:2px">
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<span style="font-size:.7rem;padding:0 2px">Actinobacteria_species.tsv</span></a>
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</p>
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<p><i class="fa fa-download"></i> Actinobacteria - Full data (1,347,262 pairs, 174 MB)
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<a class="btn btn-secondary btn-ufcg" href="resources/data/Actinobacteria_data.tsv.zip" role="button" rel="noopener noreferrer" style="float:none;margin-top:0;margin-bottom:2px">
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<span style="font-size:.7rem;padding:0 2px">Actinobacteria_data.tsv</span></a>
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</p>
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<p><i class="fa fa-download"></i> Archaea - Species list (390 species, 17 kB)
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<a class="btn btn-secondary btn-ufcg" href="resources/data/Archaea_species.tsv.zip" role="button" rel="noopener noreferrer" style="float:none;margin-top:0;margin-bottom:2px">
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<span style="font-size:.7rem;padding:0 2px">Archaea_species.tsv</span></a>
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</p>
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<p><i class="fa fa-download"></i> Archaea - Full data (63,190 pairs, 8 MB)
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<a class="btn btn-secondary btn-ufcg" href="resources/data/Archaea_data.tsv.zip" role="button" rel="noopener noreferrer" style="float:none;margin-top:0;margin-bottom:2px">
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<span style="font-size:.7rem;padding:0 2px">Archaea_data.tsv</span></a>
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</p>
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<p><i class="fa fa-download"></i> Microbacteriaceae - Species list (130 species, 5.5 kB)
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<a class="btn btn-secondary btn-ufcg" href="resources/data/Microbacteriaceae_species.tsv.zip" role="button" rel="noopener noreferrer" style="float:none;margin-top:0;margin-bottom:2px">
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<span style="font-size:.7rem;padding:0 2px">Microbacteriaceae_species.tsv</span></a>
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</p>
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<p><i class="fa fa-download"></i> Microbacteriaceae - Full data (8,385 pairs, 820 kB)
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<a class="btn btn-secondary btn-ufcg" href="resources/data/Microbacteriaceae_data.tsv.zip" role="button" rel="noopener noreferrer" style="float:none;margin-top:0;margin-bottom:2px">
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<span style="font-size:.7rem;padding:0 2px">Microbacteriaceae_data.tsv</span></a>
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</p>
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</div>
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</section>
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<nav class="navbar navbar-expand-md navbar-dark fixed-top bg-dark">
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<div class="container">
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<div class="navbar-header">
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<a class="navbar-brand" href="/ezaai"><img src="images/ezaai_logowork-160px.svg" width="30"> EzAAI</a>
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</div>
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<button class="navbar-toggler" type="button" data-toggle="collapse"
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data-target="#navbarsExampleDefault"
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aria-controls="navbarsExampleDefault" aria-expanded="false"
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aria-label="Toggle navigation">
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<span class="navbar-toggler-icon"></span>
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</button>
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<ul class="navbar-nav mr-auto">
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<li class="nav-item"><a class="nav-link" href="/ezaai">Home</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/tutorial">Tutorial</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/download">Download</a></li>
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<li class="nav-item"><a class="nav-link" href="https://github.com/endixk/ezaai" target="_blank" rel="noopener noreferrer"><i class="fa fa-github"></i> GitHub</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/data">Data</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/citation">Cite us</a></li>
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</ul>
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</div>
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</div>
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</nav>
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var pname = window.location.pathname;
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if(pname.split('/').length > 2){
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phead = phead + '/' + pname.split('/')[2];
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$('.navbar-nav > li > a[href="'+ phead +'"]').parent().addClass('active');
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<footer class="footer align-middle" style="padding:0 0;z-index:5">
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<p style="height:3rem; margin-top:1rem!important">&copy; <a class="a-footer" href="http://leb.snu.ac.kr/" target="_blank" rel="noopener noreferrer">Laboratory of Evolutionary Bioinformatics</a>, Seoul
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National University. 2021-</p>
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</footer>
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</body>
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</html>

‎docs/download.html‎

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src="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/js/bootstrap.min.js"
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<li class="nav-item"><a class="nav-link" href="/ezaai">Home</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/tutorial">Tutorial</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/download">Download</a></li>
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<li class="nav-item"><a class="nav-link" href="https://github.com/lebsnu/ezaai" target="_blank" rel="noopener noreferrer"><i class="fa fa-github"></i> GitHub</a></li>
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<li class="nav-item"><a class="nav-link" href="https://github.com/endixk/ezaai" target="_blank" rel="noopener noreferrer"><i class="fa fa-github"></i> GitHub</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/data">Data</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/citation">Cite us</a></li>
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‎docs/index.html‎

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‎docs/tutorial.html‎

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<li class="nav-item"><a class="nav-link" href="/ezaai">Home</a></li>
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<li class="nav-item"><a class="nav-link" href="/ezaai/tutorial">Tutorial</a></li>
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<li class="nav-item"><a class="nav-link" href="https://github.com/lebsnu/ezaai" target="_blank" rel="noopener noreferrer"><i class="fa fa-github"></i> GitHub</a></li>
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<li class="nav-item"><a class="nav-link" href="https://github.com/endixk/ezaai" target="_blank" rel="noopener noreferrer"><i class="fa fa-github"></i> GitHub</a></li>
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