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Clean up preprocessing pipeline #1857

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@piotrkan

Our preprocessing pipeline is a bit messy - and since we started implementing KG preprocessing in there, we should make sure it's up to a certain standard and follows defined data processes we have (eg where should preprocessing data be stored, should the final product be saved in GCS directly or locally)

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    staletech debt removaluse this for small items that anyone can pick up and help us improve our overall codebase health

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