Requesting Information on the Availability of Commands for Extracting Protein Embeddings Using the ESM3 Model

[faezesarlakifar]

Is there any super helpful command for ESM3, like the one for ESM-v2, which directly extracts embeddings from protein primary sequences in FASTA format?

esm/scripts/extract.py esm2_t33_650M_UR50D $input_file
embeddings/algpred2_train_positive --repr_layers 0 32 33 --include mean per_tok

[jzrepus]

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