Latest pip install fails on windows 10 despite available visual studio

[christian-steinmeyer]

• PymRMR version: latest
• Python version: 3.7.5
• Operating System: Windows 10

Description

I tried to install pymrmr via pip install pymrmr but that failed.

What I Did

I'm working from an anaconda environment and the anaconda prompt for windows. I've installed cython via pip install cython. Then, I received the error message, telling me I need a c++ distribution. I've followed the link from the error message, installed the following packages from visual studio build tools:

• MSVC v142 – VS 2019 C++-x64/x86-Buildtools (v14.24)
• C++ 2019 Redistributable-Update
• Windows 10 SDK (10.0.18362.0)
• C++-CMake-Tools for Windows
• .NET Framework 4.8 SDK
• Package to set target versions of .NET Framework 4.6.1
• C++-/CLI-support for v142-Buildtools (14.24)
• C++-Modules for v142-Buildtools (X64/X86 – experimental)
• NuGet-Targets and Build tasks
• Package to set target versions of .NET Framework 4.6
• Package to set target versions of .NET Framework 4.8
• Visual Studio SDK Build Tools Core
• C++ 2019 Redistributable-MSMs

Then, I tried to install pymrmr again and received the following error message:

>pip install pymrmr
Collecting pymrmr
  Using cached https://files.pythonhosted.org/packages/b3/ab/903712947a2f5cd1af249132885dbd81ae8bf8cfd30fb3b3f2beddab23e8/pymrmr-0.1.8.tar.gz
Requirement already satisfied: numpy>=1.12.0 in c:\users\[my-username]\.conda\envs\[my-conda-environment]\lib\site-packages (from pymrmr) (1.17.4)
Building wheels for collected packages: pymrmr
  Building wheel for pymrmr (setup.py) ... /  
  [...]
  ERROR: Command errored out with exit status 1:
   command: 'C:\Users\[my-username]\.conda\envs\[my-conda-environment]\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\[my-username]\\AppData\\Local\\Temp\\pip-install-a9qm24d7\\pymrmr\\setup.py'"'"'; __file__='"'"'C:\\Users\\[my-username]\\AppData\\Local\\Temp\\pip-install-a9qm24d7\\pymrmr\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d 'C:\Users\[my-username]\AppData\Local\Temp\pip-wheel-gasidp6b' --python-tag cp37
       cwd: C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\
  Complete output (97 lines):
  running bdist_wheel
  running build
  running build_py
  package init file 'pymrmr\__init__.py' not found (or not a regular file)
  running egg_info
  writing pymrmr.egg-info\PKG-INFO
  writing dependency_links to pymrmr.egg-info\dependency_links.txt
  writing requirements to pymrmr.egg-info\requires.txt
  writing top-level names to pymrmr.egg-info\top_level.txt
  reading manifest file 'pymrmr.egg-info\SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no previously-included files matching '__pycache__' found under directory '*'
  warning: no previously-included files matching '*.py[co]' found under directory '*'
  warning: no files found matching '*.jpg' under directory 'docs'
  warning: no files found matching '*.png' under directory 'docs'
  warning: no files found matching '*.gif' under directory 'docs'
  writing manifest file 'pymrmr.egg-info\SOURCES.txt'
  creating build
  creating build\lib.win-amd64-3.7
  creating build\lib.win-amd64-3.7\pymrmr
  copying pymrmr\crank.cpp -> build\lib.win-amd64-3.7\pymrmr
  copying pymrmr\mrmr.cpp -> build\lib.win-amd64-3.7\pymrmr
  copying pymrmr\nrutil.cpp -> build\lib.win-amd64-3.7\pymrmr
  copying pymrmr\nrutil.h -> build\lib.win-amd64-3.7\pymrmr
  copying pymrmr\pbetai.cpp -> build\lib.win-amd64-3.7\pymrmr
  copying pymrmr\pymrmr.cpp -> build\lib.win-amd64-3.7\pymrmr
  copying pymrmr\pymrmr.pyx -> build\lib.win-amd64-3.7\pymrmr
  copying pymrmr\sort2.cpp -> build\lib.win-amd64-3.7\pymrmr
  running build_ext
  skipping 'pymrmr\pymrmr.cpp' Cython extension (up-to-date)
  building 'pymrmr' extension
  creating build\temp.win-amd64-3.7
  creating build\temp.win-amd64-3.7\Release
  creating build\temp.win-amd64-3.7\Release\pymrmr
  C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.24.28314\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -IC:\Users\[my-username]\.conda\envs\[my-conda-environment]\lib\site-packages\numpy\core\include -IC:\Users\[my-username]\.conda\envs\[my-conda-environment]\include -IC:\Users\[my-username]\.conda\envs\[my-conda-environment]\include "-IC:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.24.28314\include" "-IC:\Program Files (x86)\Windows Kits\NETFXSDK\4.8\include\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\shared" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\winrt" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.18362.0\cppwinrt" /EHsc /Tppymrmr\pymrmr.cpp /Fobuild\temp.win-amd64-3.7\Release\pymrmr\pymrmr.obj -fopenmp -Ofast
  cl : command line warning D9025 : "/Os" is replaced with "/Ot"
  cl : command line warning D9002 : unknown option "-fopenmp" is ignored.
  cl : command line warning D9002 : unknown option "-Of" is ignored.
  cl : command line warning D9002 : unknown option "-Oa" is ignored.
  pymrmr.cpp
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(33): warning C4244: "return": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(47): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(48): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(50): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(51): warning C4305: "=": conversion of "double" to "float"
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(52): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(57): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(58): warning C4305: "=": conversion of "double" to "float"
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(59): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(60): warning C4305: "=": conversion of "double" to "float"
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(61): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(64): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(65): warning C4305: "=": conversion of "double" to "float"
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(66): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(67): warning C4305: "=": conversion of "double" to "float"
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(68): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(90): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(94): warning C4244: "argument": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\pbetai.cpp(94): warning C4244: "return": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\mrmr.cpp(189): warning C4267: "argument": conversion of "size_t" to "long", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\mrmr.cpp(205): warning C4267: "=": conversion of "size_t" to "unsigned long", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\mrmr.cpp(215): warning C4244: "=": conversion of "double" to "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\mrmr.cpp(216): warning C4244: "=": conversion of "unsigned long" in "float", possible data loss
  C:\Users\[my-username]\AppData\Local\Temp\pip-install-a9qm24d7\pymrmr\pymrmr\mrmr.cpp(221): warning C4267: "argument": conversion of "size_t" to "unsigned long", possible data loss
  pymrmr\pymrmr.cpp(5418): error C2197: "PyObject *(__cdecl *)(PyObject *,PyObject *const *,Py_ssize_t)": Too many arguments for coll.
  pymrmr\pymrmr.cpp(5990): error C2039: "exc_type": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(5991): error C2039: "exc_value": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(5992): error C2039: "exc_traceback": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(5999): error C2039: "exc_type": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(6000): error C2039: "exc_value": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(6001): error C2039: "exc_traceback": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(6002): error C2039: "exc_type": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(6003): error C2039: "exc_value": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(6004): error C2039: "exc_traceback": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(6059): error C2039: "exc_type": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(6060): error C2039: "exc_value": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(6061): error C2039: "exc_traceback": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(6062): error C2039: "exc_type": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(6063): error C2039: "exc_value": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  pymrmr\pymrmr.cpp(6064): error C2039: "exc_traceback": Not an element of "_ts"
  C:\Users\[my-username]\.conda\envs\[my-conda-environment]\include\pystate.h(212): note: See declaration of "_ts"
  error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio\\2019\\BuildTools\\VC\\Tools\\MSVC\\14.24.28314\\bin\\HostX86\\x64\\cl.exe' failed with exit status 2
  ----------------------------------------
  ERROR: Failed building wheel for pymrmr
  Running setup.py clean for pymrmr
Failed to build pymrmr

Note, that my machine is set to German and I manually translated part of these messages to English.

[hash-ir]

I had the same issue installing it. I don't really know if you fixed it, but for others, here's a quick solution which might help:

Reproducing my setup:

• Windows 10
• Python 3.6.10 (Anaconda)
• pmrmr version: 0.1.1

1. Use python distribution 3.6 or earlier. There seemed to be an error for the visual studio tools for python 3.7
2. Install Build Tools for Visual Studio and select the following:

3. Install dependencies
pip install numpy cython
4. Finally, install pymrmr
pip install pymrmr