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We’ve talked about how it would be great if there was a possibility to export CLI runs to a Galaxy instance. The question is how that should be implemented—should we use RO-Crates? If so, we’d likely need to handle: "Add functionality for exporting RO crates #1045".
If not, could we instead use Galaxy’s archiving functionality to export a CLI run to a Galaxy instance? And if we go that route, would a workflow like this make sense?
- Use the
/api/histories/{history_id}/prepare_store_download
endpoint to package the history. - Poll
/api/short_term_storage/{storage_id}/ready
to check when the package is available. - Download the archive from
/api/short_term_storage/{storage_id}
. - Re-upload it to a Galaxy instance using
/api/histories
.
Alternatively, could we use the /api/histories/{history_id}/write_store? endpoint for this instead?
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