mhc-ii-pred/pyproject.toml at main · guyzyl/mhc-ii-pred · GitHub

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[tool.poetry]
name = "mhc-ii-pred"
version = "0.1.0"
description = ""
authors = ["Guy Zylberberg <guyzyl@gmail.com>"]
license = "Apache 2.0"
readme = "README.md"
packages = [{include = "mhc_ii_pred"}]


[tool.poetry.dependencies]
python = "^3.8"
pytorch-lightning = "^1.9.3"
torch = "^1.13.1"
typer = "^0.7.0"
wandb = "^0.13.10"
numpy = "^1.24.2"
torchmetrics = "^0.11.3"

[tool.poetry.group.dev.dependencies]
black = "^23.1.0"
mypy = "^1.0.1"
pylint = "^2.16.2"

[tool.poetry.group.deepmhcii.dependencies]
ruamel-yaml = "^0.17.21"
logzero = "^1.7.0"

[tool.poetry.group.netmhc.dependencies]
pandas = "^2.0.0"


[tool.pylint.message_control]
disable = [
    "missing-class-docstring",
    "missing-function-docstring",
    "missing-module-docstring",
    "line-too-long",
]

[tool.mypy]
disallow_untyped_defs = true
disallow_incomplete_defs = true
no_implicit_optional = true
show_column_numbers = true
ignore_missing_imports = true


[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"