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[maxgittelman]

I'm having trouble ensuring docker is the correct version. Is Docker-CE v17.09 (Community Edition) considered greater than v1.13 by your standards?

Perhaps it would be helpful to include docker installation instructions because the version that apt-get installs is v1.12 which unfortunately makes it unsure whether the rest of the README instructions will be valid.

Currently this is what I have taken directly from Docker's website:

maxgitt@mgpc:~/devspace$ docker version
Client:
 Version:      17.09.0-ce
 API version:  1.32
 Go version:   go1.8.3
 Git commit:   afdb6d4
 Built:        Tue Sep 26 22:42:18 2017
 OS/Arch:      linux/amd64

Server:
 Version:      17.09.0-ce
 API version:  1.32 (minimum version 1.12)
 Go version:   go1.8.3
 Git commit:   afdb6d4
 Built:        Tue Sep 26 22:40:56 2017
 OS/Arch:      linux/amd64
 Experimental: false

[maxgittelman]

This newest version is valid. Simply follow the instructions for docker and docker-compose

[bjuergens]

can you tell me what exactly you did differently?

I followed the regular instructions and ended up with docker 17.09.0-ce, too. And I'm not sure if this is the reason why omero fails for me

[maxgittelman]

Are you also having trouble signing in?

[bjuergens]

yes

[maxgittelman]

any luck, @wotanii , @hadim I've been working on getting OMERO set up for 3 weeks. Your solution seems the most promising, any guidance as to why root and password would fail at sign in would be greatly appreciated

[maxgittelman]

I tried logging into omero via the Docker container

mgitt@mgpc:~$ docker exec -it omero-server bash

omero@0a17cb6afb20:/omero$ cd OMERO.server
omero@0a17cb6afb20:/omero/OMERO.server$ bin/omero login
Server: [localhost:4064]
Username: [omero]
Password:
internal server error

Even now, using password password isn't valid, I must be doing something trivially wrong.

[hadim]

Sorry but I am not using this project for months now and I don't have time to test it at the moment.

In the meantime maybe you could have a look at this https://hub.docker.com/u/openmicroscopy/ ?

[bjuergens]

thanks for this. At least now I know there is nothing wrong with my setup.

fyi: I managed to login once via the web-interface. But I wasn't able to reproduce this success. So the error is probably not trivial, but maybe timing related.

[hadim]

Are the log showing something special during setup or logging?

[maxgittelman]

@wotanii What username and password did you use?

[bjuergens]

bjoern@b8book ~> bash
bjoern@b8book:~$ cd dev/project/
bjoern@b8book:~/dev/project$ mkdir omero/ && cd omero/
bjoern@b8book:~/dev/project/omero$ mkdir omero-data/
bjoern@b8book:~/dev/project/omero$ mkdir docker-omero/ && cd docker-omero/
bjoern@b8book:~/dev/project/omero/docker-omero$ wget https://raw.githubusercontent.com/hadim/docker-omero/master/docker-compose.yml
--2017-10-15 17:54:13--  https://raw.githubusercontent.com/hadim/docker-omero/master/docker-compose.yml
Auflösen des Hostnamens »raw.githubusercontent.com (raw.githubusercontent.com)« … 151.101.112.133
Verbindungsaufbau zu raw.githubusercontent.com (raw.githubusercontent.com)|151.101.112.133|:443 … verbunden.
HTTP-Anforderung gesendet, auf Antwort wird gewartet … 200 OK
Länge: 997 [text/plain]
Wird in »»docker-compose.yml«« gespeichert.

docker-compose.yml  100%[===================>]     997  --.-KB/s    in 0s      

2017-10-15 17:54:13 (55,4 MB/s) - »docker-compose.yml« gespeichert [997/997]

bjoern@b8book:~/dev/project/omero/docker-omero$ docker-compose up  # You can use the -d option to run in the background.
Pulling omero-data (hadim/omero-data:1.0.4)...
1.0.4: Pulling from hadim/omero-data
4b0bc1c4050b: Pull complete
fdeda2f48bcf: Pull complete
4c9e4da48fe1: Pull complete
24db4f3aad04: Pull complete
60cee1420c06: Pull complete
bc876761a375: Pull complete
d349107d940d: Pull complete
Digest: sha256:9aac7a3bc84708c3d7e1b167332411a2d69131c5abf1e7211682e6e5cba0a268
Status: Downloaded newer image for hadim/omero-data:1.0.4
Pulling omero-db (hadim/omero-db:1.0.4)...
1.0.4: Pulling from hadim/omero-db
5040bd298390: Pull complete
f08454c3c700: Pull complete
4db038cdfe03: Pull complete
e1d9ba315f03: Pull complete
25e0ee93170e: Pull complete
3f28084c3f51: Pull complete
76d12bfb9a68: Pull complete
6cc4865c8c35: Pull complete
37dde1aef698: Pull complete
14c5bb3a3721: Pull complete
0ea50576a1d9: Pull complete
b3efbbe19e87: Pull complete
8b7fe7b57388: Pull complete
9b1f99663d30: Pull complete
62f1da30a989: Pull complete
Digest: sha256:04455a888d18d7e2d6c13387be48afb71329291a60ace431528d4c7d252f2531
Status: Downloaded newer image for hadim/omero-db:1.0.4
Pulling omero-server (hadim/omero-server:1.0.4)...
1.0.4: Pulling from hadim/omero-server
8aec416115fd: Pull complete
695f074e24e3: Pull complete
946d6c48c2a7: Pull complete
bc7277e579f0: Pull complete
2508cbcde94b: Pull complete
c9eb9065e9f8: Pull complete
ccaa2d24a59d: Pull complete
b44b3cc94149: Pull complete
f30347ab14dd: Pull complete
61ee8864aee8: Pull complete
4bc4be568ed4: Pull complete
8f73a218d733: Pull complete
cd8017a242b6: Pull complete
904655119942: Pull complete
48421d52c9b9: Pull complete
b67d15e90dd7: Pull complete
0f59dfe8d2f5: Pull complete
Digest: sha256:39be70a94b155f6799e037b8a1818d5e36dca22aa2257c5a751e8537a016b782
Status: Downloaded newer image for hadim/omero-server:1.0.4
Pulling omero-web (hadim/omero-web:1.0.4)...
1.0.4: Pulling from hadim/omero-web
8aec416115fd: Already exists
695f074e24e3: Already exists
946d6c48c2a7: Already exists
bc7277e579f0: Already exists
2508cbcde94b: Already exists
c9eb9065e9f8: Already exists
ccaa2d24a59d: Already exists
b44b3cc94149: Already exists
f30347ab14dd: Already exists
61ee8864aee8: Already exists
4bc4be568ed4: Already exists
8f73a218d733: Already exists
cd8017a242b6: Already exists
904655119942: Already exists
48421d52c9b9: Already exists
310265976823: Pull complete
17073060e367: Pull complete
68f895e7d580: Pull complete
9477821049c1: Pull complete
ee5fdbf6a7d9: Pull complete
269f381a076e: Pull complete
5fd9df4b1c01: Pull complete
813a3e1aa20c: Pull complete
4f704bef368e: Pull complete
25a32f474e3f: Pull complete
88ac556c7e73: Pull complete
0471f6880516: Pull complete
d1894e8ab4eb: Pull complete
Digest: sha256:4933d276371788f059dc46383395eb27fb9fb741c0cc33f8b11aa438d2f10657
Status: Downloaded newer image for hadim/omero-web:1.0.4
Creating omero-data ... 
Creating omero-data ... done
Creating omero-db ... 
Creating omero-db ... done
Creating omero-server ... 
Creating omero-server ... done
Creating omero-web ... 
Creating omero-web ... done
Attaching to omero-data, omero-db, omero-server, omero-web
omero-db        | The files belonging to this database system will be owned by user "postgres".
omero-db        | This user must also own the server process.
omero-db        | 
omero-db        | The database cluster will be initialized with locale "en_US.utf8".
omero-db        | The default database encoding has accordingly been set to "UTF8".
omero-db        | The default text search configuration will be set to "english".
omero-db        | 
omero-db        | Data page checksums are disabled.
omero-db        | 
omero-server    | Waiting for database server to be up.
omero-db        | fixing permissions on existing directory /data/postgres ... ok
omero-db        | creating subdirectories ... ok
omero-db        | selecting default max_connections ... 100
omero-db        | selecting default shared_buffers ... 128MB
omero-db        | selecting dynamic shared memory implementation ... posix
omero-db        | creating configuration files ... ok
omero-db        | creating template1 database in /data/postgres/base/1 ... ok
omero-data exited with code 0
omero-db        | initializing pg_authid ... ok
omero-db        | initializing dependencies ... ok
omero-db        | creating system views ... ok
omero-web       | 2017-10-15 15:55:47,666 CRIT Supervisor running as root (no user in config file)
omero-web       | 2017-10-15 15:55:47,669 INFO supervisord started with pid 1
omero-db        | loading system objects' descriptions ... ok
omero-db        | creating collations ... ok
omero-db        | creating conversions ... ok
omero-db        | creating dictionaries ... ok
omero-db        | setting privileges on built-in objects ... ok
omero-db        | creating information schema ... ok
omero-db        | loading PL/pgSQL server-side language ... ok
omero-db        | vacuuming database template1 ... ok
omero-db        | copying template1 to template0 ... ok
omero-db        | copying template1 to postgres ... ok
omero-db        | syncing data to disk ... ok
omero-db        | 
omero-db        | Success. You can now start the database server using:
omero-db        | 
omero-db        |     /usr/lib/postgresql/9.4/bin/postgres -D /data/postgres
omero-db        | or
omero-db        |     /usr/lib/postgresql/9.4/bin/pg_ctl -D /data/postgres -l logfile start
omero-db        | 
omero-db        | 
omero-db        | WARNING: enabling "trust" authentication for local connections
omero-db        | You can change this by editing pg_hba.conf or using the option -A, or
omero-db        | --auth-local and --auth-host, the next time you run initdb.
omero-db        | LOG:  database system was shut down at 2017-10-15 15:55:48 UTC
omero-db        | LOG:  MultiXact member wraparound protections are now enabled
omero-db        | LOG:  database system is ready to accept connections
omero-db        | LOG:  autovacuum launcher started
omero-web       | 2017-10-15 15:55:48,674 INFO spawned: 'nginx' with pid 10
omero-web       | 2017-10-15 15:55:48,679 INFO spawned: 'omero_web' with pid 11
omero-web       | 2017-10-15 15:55:48,721 INFO exited: nginx (exit status 1; not expected)
omero-web       | 2017-10-15 15:55:48,792 INFO exited: omero_web (exit status 127; not expected)
omero-web       | 2017-10-15 15:55:49,796 INFO spawned: 'nginx' with pid 19
omero-web       | 2017-10-15 15:55:49,800 INFO spawned: 'omero_web' with pid 20
omero-web       | 2017-10-15 15:55:50,806 INFO success: nginx entered RUNNING state, process has stayed up for > than 1 seconds (startsecs)
omero-web       | 2017-10-15 15:55:50,806 INFO success: omero_web entered RUNNING state, process has stayed up for > than 1 seconds (startsecs)
omero-db        | FATAL:  role "omero" does not exist
omero-server    | WARNING: Positional arguments are deprecated
omero-server    | Using OMERO5.2 for version
omero-server    | Using 0 for patch
omero-server    | Using password from commandline
omero-web       | 2017-10-15 15:55:54,051 INFO exited: omero_web (exit status 0; expected)
omero-web       | 2017-10-15 15:55:54,116 INFO reaped unknown pid 48
omero-web       | 2017-10-15 15:55:54,117 INFO reaped unknown pid 49
omero-server    | BEGIN
omero-server    | CREATE FUNCTION

### ... lots of sql

omero-server    | ALTER TABLE
omero-server    | ALTER TABLE
omero-server    | UPDATE 1
omero-server    | COMMIT
omero-server    | No descriptor given. Using etc/grid/default.xml
omero-db        | LOG:  unexpected EOF on client connection with an open transaction

the list line appeared with a little delay again

trying to login at https://localhost/ results in
Error: Server is not responding, please contact administrator

after restarting the container the log looks like:

omero-db        | LOG:  unexpected EOF on client connection with an open transaction
^CGracefully stopping... (press Ctrl+C again to force)
Stopping omero-web ... done
Stopping omero-server ... done
Stopping omero-db ... done
bjoern@b8book:~/dev/project/omero/docker-omero$ docker-compose up  # You can use the -d option to run in the background.
Starting omero-data ... 
Starting omero-data ... done
Starting omero-db ... 
Starting omero-db ... done
Starting omero-server ... 
Starting omero-server ... done
Starting omero-web ... 
Starting omero-web ... done
Attaching to omero-data, omero-db, omero-server, omero-web
omero-db        | LOG:  database system was interrupted; last known up at 2017-10-15 16:03:02 UTC
omero-db        | LOG:  database system was not properly shut down; automatic recovery in progress
omero-db        | LOG:  record with zero length at 0/2068A00
omero-db        | LOG:  redo is not required
omero-db        | LOG:  MultiXact member wraparound protections are now enabled
omero-db        | LOG:  autovacuum launcher started
omero-db        | LOG:  database system is ready to accept connections
omero-data exited with code 0
omero-web       | 2017-10-15 16:03:17,863 CRIT Supervisor running as root (no user in config file)
omero-web       | 2017-10-15 16:03:17,865 INFO supervisord started with pid 1
omero-web       | 2017-10-15 16:03:18,867 INFO spawned: 'nginx' with pid 9
omero-web       | 2017-10-15 16:03:18,868 INFO spawned: 'omero_web' with pid 10
omero-web       | 2017-10-15 16:03:19,921 INFO success: nginx entered RUNNING state, process has stayed up for > than 1 seconds (startsecs)
omero-web       | 2017-10-15 16:03:19,921 INFO success: omero_web entered RUNNING state, process has stayed up for > than 1 seconds (startsecs)
omero-web       | 2017-10-15 16:03:22,619 INFO exited: omero_web (exit status 96; not expected)
omero-server    | No descriptor given. Using etc/grid/default.xml
omero-web       | 2017-10-15 16:03:23,625 INFO spawned: 'omero_web' with pid 38
omero-web       | 2017-10-15 16:03:25,147 INFO success: omero_web entered RUNNING state, process has stayed up for > than 1 seconds (startsecs)
omero-web       | 2017-10-15 16:03:28,704 INFO exited: omero_web (exit status 0; expected)
omero-web       | 2017-10-15 16:03:28,802 INFO reaped unknown pid 60
omero-web       | 2017-10-15 16:03:28,803 INFO reaped unknown pid 61
omero-db        | LOG:  unexpected EOF on client connection with an open transaction

the list line appeared with a little delay again

trying to login at https://localhost/ results in the same as before

[bjuergens]

pass word always: root/password

I suspect the last line: omero-db | LOG: unexpected EOF on client connection with an open transaction is the reason for the failure