CI #294
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| name: CI | |
| on: | |
| push: | |
| branches: [main] | |
| tags: [v*] | |
| pull_request: | |
| workflow_dispatch: | |
| schedule: | |
| # run every week (for --pre release tests) | |
| - cron: "0 0 * * 0" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| check-manifest: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - run: pipx run check-manifest | |
| check-types: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: astral-sh/setup-uv@v7 | |
| with: | |
| python-version: "3.13" | |
| - run: uv run ty check -vv | |
| test: | |
| name: ${{ matrix.platform }} (${{ matrix.python-version }}) [${{ matrix.resolution }}] ${{ matrix.group == 'test-full' && '(full)' || '' }} | |
| runs-on: ${{ matrix.platform }} | |
| env: | |
| UV_PRERELEASE: ${{ github.event_name == 'schedule' && 'allow' || 'if-necessary-or-explicit' }} | |
| UV_RESOLUTION: ${{ matrix.resolution }} | |
| PYTEST_ADDOPTS: ${{ matrix.resolution == 'lowest-direct' && '-W ignore' || '' }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| resolution: ["highest", "lowest-direct"] | |
| group: ["test-full"] | |
| include: | |
| - python-version: "3.10" | |
| platform: ubuntu-latest | |
| resolution: lowest-direct | |
| group: test | |
| - python-version: "3.11" | |
| platform: windows-latest | |
| resolution: highest | |
| group: test | |
| - python-version: "3.11" | |
| platform: macos-latest | |
| resolution: lowest-direct | |
| group: test | |
| - python-version: "3.13" | |
| platform: ubuntu-latest | |
| resolution: highest | |
| group: test | |
| - python-version: "3.13" | |
| platform: ubuntu-latest | |
| resolution: lowest-direct | |
| group: test | |
| - python-version: "3.14" | |
| platform: ubuntu-latest | |
| resolution: lowest-direct | |
| group: test | |
| - python-version: "3.14" | |
| platform: ubuntu-latest | |
| resolution: highest | |
| group: test | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - name: 🐍 Set up Python ${{ matrix.python-version }} | |
| uses: astral-sh/setup-uv@v7 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| enable-cache: true | |
| - uses: actions/setup-node@v6 | |
| with: | |
| node-version: "22" | |
| - name: 🧪 Run Tests | |
| run: uv run --no-dev --group ${{ matrix.group }} coverage run -p -m pytest -v | |
| # If something goes wrong with --pre tests, we can open an issue in the repo | |
| - name: 📝 Report --pre Failures | |
| if: failure() && github.event_name == 'schedule' | |
| uses: JasonEtco/create-an-issue@v2 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| PLATFORM: ${{ matrix.platform }} | |
| PYTHON: ${{ matrix.python-version }} | |
| RUN_ID: ${{ github.run_id }} | |
| TITLE: "[test-bot] pip install --pre is failing" | |
| with: | |
| filename: .github/TEST_FAIL_TEMPLATE.md | |
| update_existing: true | |
| - name: Upload coverage | |
| uses: actions/upload-artifact@v6 | |
| with: | |
| name: covreport-${{ matrix.platform }}-py${{ matrix.python-version }}-${{ matrix.resolution }}-${{ matrix.group }} | |
| path: ./.coverage* | |
| include-hidden-files: true | |
| test-realworld: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: astral-sh/setup-uv@v7 | |
| with: | |
| python-version: "3.13" | |
| enable-cache: true | |
| - name: 🧪 Run Tests | |
| run: uv run --no-dev --group test --extra io coverage run -p -m pytest tests/test_realworld.py | |
| - name: Upload coverage | |
| uses: actions/upload-artifact@v6 | |
| with: | |
| name: covreport-realworld | |
| path: ./.coverage* | |
| include-hidden-files: true | |
| upload_coverage: | |
| if: always() | |
| needs: [test, test-realworld] | |
| uses: pyapp-kit/workflows/.github/workflows/upload-coverage.yml@v2 | |
| secrets: | |
| codecov_token: ${{ secrets.CODECOV_TOKEN }} | |
| test_demo_script: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - uses: astral-sh/setup-uv@v7 | |
| with: | |
| enable-cache: true | |
| - run: | | |
| for ome_type in "image" "labels" "plate"; do | |
| for ome_version in "0.4" "0.5"; do | |
| DEST="${ome_type}.ome.zarr" | |
| # remove existing demo file if any | |
| rm -rf "${DEST}" | |
| echo "Writing type $ome_type version $ome_version" | |
| uv run scripts/write_demo_zarr.py --version "$ome_version" --overwrite "$ome_type" "${DEST}" | |
| # ensure it was written | |
| ls -lh "${DEST}" | |
| done | |
| done | |
| build-and-inspect-package: | |
| name: Build & inspect package. | |
| needs: test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| with: | |
| fetch-depth: 0 | |
| - uses: hynek/build-and-inspect-python-package@v2 | |
| upload-to-pypi: | |
| name: Upload package to PyPI | |
| needs: build-and-inspect-package | |
| if: success() && startsWith(github.ref, 'refs/tags/') && github.event_name != 'schedule' | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| contents: write | |
| steps: | |
| - name: Download built artifact to dist/ | |
| uses: actions/download-artifact@v7 | |
| with: | |
| name: Packages | |
| path: dist | |
| - name: 🚢 Publish to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| - uses: softprops/action-gh-release@v2 | |
| with: | |
| generate_release_notes: true | |
| files: "./dist/*" |