feat: integrate clio-agentic-search into monorepo

- Remove planning artifacts (EXECUTION_PLAN, RISK_REGISTER, CLOUD_CONTINUE_HERE)
- Add standalone CI jobs (ruff, mypy, pytest) to quality_control.yml
- Add to README package listing as standalone service
- Add dev commands section to CLAUDE.md
- Add website entry in mcpData.js and docs page

Author: akougkas

.github/workflows/quality_control.yml

@@ -246,3 +246,69 @@ jobs:
         fi
 
         echo "PASS: server.json is in sync for ${{ matrix.mcp }}"
+
+  # ── clio-agentic-search (standalone service, not an MCP server) ──
+
+  agentic-search-ruff:
+    name: Ruff - clio-agentic-search
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - uses: astral-sh/setup-uv@v3
+      with:
+        version: "latest"
+    - run: uv python install 3.12
+    - name: Install dependencies
+      run: |
+        cd clio-agentic-search
+        uv sync --all-extras --dev
+    - name: Ruff lint
+      run: |
+        cd clio-agentic-search
+        uv run ruff check --output-format=github .
+    - name: Ruff format check
+      run: |
+        cd clio-agentic-search
+        uv run ruff format --check .
+
+  agentic-search-mypy:
+    name: MyPy - clio-agentic-search
+    runs-on: ubuntu-latest
+    continue-on-error: true
+    steps:
+    - uses: actions/checkout@v4
+    - uses: astral-sh/setup-uv@v3
+      with:
+        version: "latest"
+    - run: uv python install 3.12
+    - name: Install dependencies
+      run: |
+        cd clio-agentic-search
+        uv sync --all-extras --dev
+    - name: Run MyPy
+      run: |
+        cd clio-agentic-search
+        uv run mypy src/ --ignore-missing-imports --show-error-codes --no-error-summary
+
+  agentic-search-test:
+    name: Test - clio-agentic-search (py${{ matrix.python-version }})
+    runs-on: ubuntu-latest
+    continue-on-error: ${{ matrix.python-version != '3.12' }}
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.10", "3.11", "3.12"]
+    steps:
+    - uses: actions/checkout@v4
+    - uses: astral-sh/setup-uv@v3
+      with:
+        version: "latest"
+    - run: uv python install ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        cd clio-agentic-search
+        uv sync --all-extras --dev
+    - name: Run tests
+      run: |
+        cd clio-agentic-search
+        uv run pytest --ignore=tests/benchmarks -v --tb=short

CLAUDE.md

@@ -35,6 +35,7 @@ clio-kit/                           # Monorepo root
 │   ├── plot/                          # Data visualization
 │   ├── adios/                         # ADIOS2 data I/O
 │   └── [each has its own pyproject.toml, dependencies, tests]
+├── clio-agentic-search/             # Standalone hybrid retrieval engine (not an MCP server)
 ├── clio-kit-website/                # Docusaurus documentation site
 ├── scripts/                           # Utility scripts (generate_docs.py, etc)
 ├── .github/workflows/                 # CI/CD automation
@@ -129,6 +130,32 @@ uv run ruff check --fix .
 uv run mypy src/
 ```
 
+### clio-agentic-search (Standalone Service)
+
+```bash
+# Setup
+cd clio-agentic-search
+uv sync --all-extras --dev
+
+# Quality checks
+uv run ruff check .
+uv run ruff format --check .
+uv run mypy src/
+uv run pytest --ignore=tests/benchmarks -v
+
+# Full quality gate (6 checks)
+uv run python -m clio_agentic_search.evals.quality_gate
+
+# Run API server
+uv run uvicorn clio_agentic_search.api.app:app --reload
+
+# CLI
+uv run clio query --namespace local_fs --q "pressure between 190 and 360 kPa"
+uv run clio index --namespace local_fs
+```
+
+**Note**: clio-agentic-search is NOT an MCP server. It's a standalone FastAPI service with its own CI jobs in `quality_control.yml`. The launcher does not discover it.
+
 ## Architecture Patterns
 
 ### Standard MCP Server Structure

README.md

@@ -207,6 +207,12 @@ See [Claude Desktop MCP docs](https://modelcontextprotocol.io/quickstart/user) f
 
 </div>
 
+### Standalone Services
+
+| **Service** | **Description** |
+|:---|:---|
+| **[`clio-agentic-search`](clio-agentic-search/)** | Hybrid retrieval engine with lexical, vector, and scientific search over namespaced document corpora |
+
 ---
 
 ## 📖 Usage Examples