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velociraptor 1.21.3

  • Update dependencies for MacOSXArm (again).

velociraptor 1.21.2

  • Update dependencies for MacOSXArm.

velociraptor 1.21.1

  • Pin version of all dependencies.

velociraptor 1.19.1

  • Switch import of OS-detecting function to basilisk.
  • Update scvelo to 0.3.3 (PyPI) for all operating systems.

velociraptor 1.15.13

  • Add separate environment (untested) for Linux Aarch64. Cannot break that platform more than it already is.

velociraptor 1.15.12

  • Update Conda environment for Linux to avoid Anaconda channel.

velociraptor 1.15.11

  • Re-enable plotVelocityStream() with a warning.

velociraptor 1.15.10

  • Temporarily disable plotVelocityStream() due to unexplained issue related to metr::geom_streamline()

velociraptor 1.15.9

  • Update Conda environment for Linux and MacOSX Arm.
  • Patch GitHub Action to use GitHub version of remotes.

velociraptor 1.15.8

  • Update Conda environment using micromamba for MacOSX Arm.
  • Fix switch between MacOSX and MacOSX Arm environments.

velociraptor 1.15.7

  • Update Conda environment using micromamba for Windows.

velociraptor 1.15.6

velociraptor 1.15.5

  • Update Conda environment to svelo==0.3.2 on Linux.

velociraptor 1.15.4

  • Set scvelo version triggering deprecation error to 0.3.1.

velociraptor 1.15.3

  • Revert environment for Linux to the one of Bioconductor release 3.18.

velociraptor 1.15.2

  • Add environment for macOS (Intel); same environment as macos (M1).

velociraptor 1.15.1

  • Fix issue #63.
  • Update scvelo to 0.3.2 (conda-forge) for macOS (M1) and Linux.
  • Update scvelo to 0.2.5 (bioconda) for Windows.
  • Add mechanism to switch Conda environment (and scvelo version) based on operating system and architecture.
  • Use scanpy.pp.neighbors to calculate neighbors due to deprecation of automatic neighbor calculation in scvelo.pp.moments.
  • Update vignette to document the change of default value for n_neighbors from scvelo (30) to scanpy (15).

velociraptor 1.13.1

  • Robust fallback mechanism using basiliskRun option testload=.

velociraptor 1.9.3

  • Pin python version in conda environment.

velociraptor 1.9.2

  • Remove column names from reduced dimension matrix in gridVectors().

velociraptor 1.5.2

  • Remove column names of reduced dimension representation before velocity embedding.

velociraptor 1.5.1

  • Add example for scvelo.params argument.

velociraptor 1.3.1

  • Add typing_extensions to environment.

velociraptor 1.1.6

  • Move sanity check vignette to inst/.

velociraptor 1.1.5

  • Add Michael Stadler to package authors.

velociraptor 1.1.4

  • Fix typo in documentation.

velociraptor 1.1.3

  • Add vignette subdirectory with sanity checks.

velociraptor 1.1.2

  • Add functions plotVelocity and plotVelocityStream.

velociraptor 1.1.1

  • Refresh cached environments.

velociraptor 1.1.0

  • Bioconductor release 1.1.0.

velociraptor 0.99.9

  • Converted various functions to S4 generics for easier use with SingleCellExperiment objects.

velociraptor 0.99.8

  • Trigger new build to repeat ExperimentHub download.

velociraptor 0.99.7

velociraptor 0.99.6

  • Set autoscale=FALSE in the call to scvelo function velocity_embedding to avoid issue related to Qt and plotting.

velociraptor 0.99.5

  • Trigger new build to check if Windows issue resolved itself.

velociraptor 0.99.4

  • Trigger new build to check whether TIMEOUT issue on Windows is reproducible.

velociraptor 0.99.3

  • Explicitly declare all Conda dependencies for scvelo.

velociraptor 0.99.2

  • Add hexsticker.

velociraptor 0.99.1

  • Remove .Rproj file from git repository.

velociraptor 0.99.0

  • First submission to Bioconductor.