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Kwok-shing Chan
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README.md

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@@ -12,7 +12,7 @@ The current GUI version is built to access the following toolboxes:
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- [FANSI (v3.0, released on 2021.10.15, i.e., commit b6ac1c9e)](https://gitlab.com/cmilovic/FANSI-toolbox/-/tree/b6ac1c9ea03380722ebe25a6dbef33fff4ea3700),
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- [SEGUE](https://xip.uclb.com/i/software/SEGUE.html), and
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- [nonlinear dipole inversion (NDI)](https://github.com/polakd/NDI_Toolbox),
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- [mritools (ROMEO/CLEARSWI) (v3.5.5)](https://github.com/korbinian90/CompileMRI.jl/releases),
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- [mritools (ROMEO/CLEARSWI) (v3.5.5)](https://github.com/korbinian90/CompileMRI.jl/releases) (2022-Oct-11: v3.5.6 also passed),
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- [MRI Susceptibility Calculation Methods, accessed 12 September 2019](https://xip.uclb.com/product/mri_qsm_tkd).
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SEPIA provides two key features for QSM processing:
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If you encounter a bug in SEPIA, please report to [github page](https://github.com/kschan0214/sepia/issues).
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If you have a more general question reagrding the usgae of SEPIA and/or other QSM questions, please make use of [github page](https://github.com/kschan0214/sepia/discussions).
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If you have a more general question regarding the usage of SEPIA and/or other QSM questions, please make use of [github page](https://github.com/kschan0214/sepia/discussions).
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## Update notes
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* Support atlas-based subcortical structure segmentation (CIT168 Reinforcement learning atlas, MuSus-100 and AHEAD) on Linux and Mac
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* Integrate R2* mapping toolbox into SEPIA
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* New function to further refine brain mask by thresholding high R2* voxels on brain edges
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* When magnitude image is used for NDI, the image will be weighted by the intensity of the 99th percentile of the masked voxels instead of the maximum to improve robustness
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* When magnitude image is used for NDI, the image will be normalised by the intensity of the 99th percentile of the masked voxels instead of the maximum to improve robustness
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Please visit the documentation website for more info regarding the newly supported methods and functions.
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