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anna-parkeranna-parker
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feat: add test for multi-seg, multi-ref submission flow (#5898)
resolves # ### Screenshot ### PR Checklist - [ ] All necessary documentation has been adapted. - [ ] The implemented feature is covered by appropriate, automated tests. - [ ] Any manual testing that has been done is documented (i.e. what exactly was tested?) 🚀 Preview: Add `preview` label to enable
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‎integration-tests/tests/specs/features/multiseg-multiref-submission-flow.spec.ts‎

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import { test } from '../../fixtures/group.fixture';
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import { BulkSubmissionPage, SingleSequenceSubmissionPage } from '../../pages/submission.page';
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import { expect } from '@playwright/test';
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import {
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CCHF_L_SEGMENT_FULL_SEQUENCE,
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CCHF_M_SEGMENT_FULL_SEQUENCE,
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CCHF_S_SEGMENT_FULL_SEQUENCE,
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} from '../../test-helpers/test-data';
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test.describe('Multi-segment multi-reference submission flow', () => {
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test('submit single sequence, edit and release', async ({ page, groupId }) => {
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test.setTimeout(120_000);
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void groupId;
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const submissionPage = new SingleSequenceSubmissionPage(page);
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await submissionPage.navigateToSubmissionPage('CCHF (Multi-Ref)');
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await submissionPage.fillSubmissionForm({
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submissionId: 'MSMR-TEST-001',
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collectionCountry: 'Laos',
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collectionDate: '2023-10-15',
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authorAffiliations: 'Research Lab, University',
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});
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await submissionPage.fillSequenceData({ mySequence: 'should not align' });
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await submissionPage.acceptTerms();
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const reviewPage = await submissionPage.submitSequence();
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await reviewPage.waitForAllProcessed();
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const editPage = await reviewPage.editFirstSequence();
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await editPage.discardSequenceFile();
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await editPage.addSequenceFile(`>key\n${CCHF_S_SEGMENT_FULL_SEQUENCE}`);
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await editPage.addSequenceFile(`>key2\n${CCHF_L_SEGMENT_FULL_SEQUENCE}`);
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await editPage.fillField('Authors', 'Integration, Test');
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await editPage.submitChanges();
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await reviewPage.waitForAllProcessed();
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const releasedPage = await reviewPage.releaseAndGoToReleasedSequences();
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const accessionVersions = await releasedPage.waitForSequencesInSearch(1);
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const firstAccessionVersion = accessionVersions[0];
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await releasedPage.openPreviewOfAccessionVersion(`${firstAccessionVersion.accession}.1`);
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const expectedDisplayName = new RegExp(
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`^Display Name: Laos/${firstAccessionVersion.accession}\\.1`,
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);
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await expect(page.getByText(expectedDisplayName)).toBeVisible();
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await expect(
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page.getByTestId('sequence-preview-modal').getByText('Length S'),
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).toBeVisible();
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await expect(
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page.getByTestId('sequence-preview-modal').getByText('Length L'),
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).toBeVisible();
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});
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test('revoke a sequence', async ({ page, groupId }) => {
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test.setTimeout(120_000);
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void groupId;
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const submissionPage = new SingleSequenceSubmissionPage(page);
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await submissionPage.navigateToSubmissionPage('CCHF (Multi-Ref)');
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await submissionPage.fillSubmissionForm({
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submissionId: 'id',
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collectionCountry: 'Uganda',
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collectionDate: '2023-10-15',
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authorAffiliations: 'Research Lab, University',
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});
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await submissionPage.fillSequenceData({ mySequence: CCHF_L_SEGMENT_FULL_SEQUENCE });
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await submissionPage.acceptTerms();
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const reviewPage = await submissionPage.submitSequence();
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await reviewPage.waitForAllProcessed();
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const releasedPage = await reviewPage.releaseAndGoToReleasedSequences();
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const accessionVersions = await releasedPage.waitForSequencesInSearch(1);
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const firstAccessionVersion = accessionVersions[0];
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await releasedPage.openPreviewOfAccessionVersion(firstAccessionVersion.accessionVersion);
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await expect(
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page.getByTestId('sequence-preview-modal').getByText('Length L'),
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).toBeVisible();
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await releasedPage.revokeSequence('revocation for integration test');
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await reviewPage.waitForAllProcessed();
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await reviewPage.releaseAndGoToReleasedSequences();
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await releasedPage.waitForAccessionVersionInSearch(firstAccessionVersion.accession, 2);
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await releasedPage.openPreviewOfAccessionVersion(`${firstAccessionVersion.accession}.2`);
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await expect(page.getByText(/This is a revocation version/)).toBeVisible();
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});
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test('submit files and revise released version', async ({ page, groupId }) => {
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test.setTimeout(120_000);
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void groupId;
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const submissionPage = new BulkSubmissionPage(page);
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await submissionPage.navigateToSubmissionPage('CCHF (Multi-Ref)');
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await submissionPage.uploadMetadataFile(
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['id', 'geoLocCountry', 'sampleCollectionDate', 'fastaIds'],
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[
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['first', 'Laos', '2023-10-15', 'first_S first_M first_L'],
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['second', 'Laos', '2023-10-16', 'second_L'],
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],
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);
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await submissionPage.uploadSequencesFile({
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first_S: CCHF_S_SEGMENT_FULL_SEQUENCE,
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first_M: CCHF_M_SEGMENT_FULL_SEQUENCE,
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first_L: CCHF_L_SEGMENT_FULL_SEQUENCE,
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second_L: CCHF_L_SEGMENT_FULL_SEQUENCE,
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});
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await submissionPage.acceptTerms();
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const reviewPage = await submissionPage.submitSequence();
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await reviewPage.waitForAllProcessed();
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const releasedPage = await reviewPage.releaseAndGoToReleasedSequences();
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const accessionVersions = await releasedPage.waitForSequencesInSearch(2);
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const firstAccessionVersion = accessionVersions[0];
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await releasedPage.openPreviewOfAccessionVersion(firstAccessionVersion.accessionVersion);
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await expect(
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page.getByTestId('sequence-preview-modal').getByText('Length L'),
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).toBeVisible();
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const editPage = await releasedPage.reviseSequence();
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const authorAffiliations = 'integration test affiliation';
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await editPage.fillField('Author affiliations', authorAffiliations);
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await editPage.submitChanges();
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await reviewPage.waitForAllProcessed();
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await reviewPage.releaseAndGoToReleasedSequences();
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await releasedPage.waitForAccessionVersionInSearch(firstAccessionVersion.accession, 2);
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await releasedPage.expectResultTableCellText(authorAffiliations);
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await releasedPage.openPreviewOfAccessionVersion(`${firstAccessionVersion.accession}.2`);
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const expectedDisplayName = new RegExp(
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`^Display Name: Laos/${firstAccessionVersion.accession}\\.2`,
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);
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await expect(page.getByText(expectedDisplayName)).toBeVisible();
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});
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});

integration-tests/tests/specs/features/multipathogen-submission-flow.spec.ts renamed to integration-tests/tests/specs/features/singleseg-multiref-submission-flow.spec copy.ts

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ import { test } from '../../fixtures/group.fixture';
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import { BulkSubmissionPage, SingleSequenceSubmissionPage } from '../../pages/submission.page';
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import { expect } from '@playwright/test';
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test.describe('Multi-pathogen submission flow', () => {
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test.describe('Single segment multi-reference submission flow', () => {
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test('submit single sequence, edit and release', async ({ page, groupId }) => {
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test.setTimeout(120_000);
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