Exploratory data analysis post-differential-analysis

[dktanwar]

MA plot

Wiki page
Interpretation of differential gene expression results of RNA-seq data: review and integration

• x-axis: logCPM
• y-axis: logFC
• color the dots with c

Volcano plot

Wiki
EnhancedVolcano

• x-axis: logFC
• y-axis: -log10(adjusted-p-val)
• color the dots with adjusted-p-val <= 0.05 & absolute logFC >= 1

Heatmap of differentially expressed bins

• Make a subset of SE for the bins with adjusted-p-val
• Make a heatmap of the normalized counts with SEtools

[dktanwar]

@Chabbeyj @BuglianiD