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Provisionally removes previously added literal profile from SSSOM (#383)
Intermediate PR to make it easier to review the new solution for representing the literal profile. Note to reviewers: Whoever approves this, intrinsically approves also #384 (modulo details). The point to merging this first is to make reviewing #384 much easier.
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src/sssom_schema/schema/sssom_schema.yaml

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@@ -125,26 +125,6 @@ slots:
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examples:
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- value: HP:0009894
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description: The CURIE denoting the Human Phenotype Ontology concept of 'Thickened ears'
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literal:
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description: The literal being mapped
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range: string
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required: true
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mappings:
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- owl:annotatedSource
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slot_uri: owl:annotatedTarget
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examples:
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- value: "Alzheimer"
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description: A string referring to some thing.
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literal_datatype:
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description: The datatype of the literal being mapped
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range: uri
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required: false
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mappings:
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- rdf:datatype
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slot_uri: rdf:datatype
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examples:
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- value: xsd:string
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description: A string referring to some thing.
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subject_label:
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description: The label of subject of the mapping
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range: string
@@ -388,20 +368,6 @@ slots:
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examples:
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- value: http://purl.obolibrary.org/obo/mondo/releases/2021-01-30/mondo.owl
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description: (A persistent Version IRI pointing to the Mondo version '2021-01-30')
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literal_source:
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description: URI of ontology source for the literal.
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range: EntityReference
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examples:
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- value: obo:mondo.owl
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description: A persistent OBO CURIE pointing to the latest version of the Mondo ontology.
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- value: wikidata:Q7876491
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description: A Wikidata identifier for the Uberon ontology resource.
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literal_source_version:
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description: Version IRI or version string of the source of the literal.
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range: string
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examples:
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- value: http://purl.obolibrary.org/obo/mondo/releases/2021-01-30/mondo.owl
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description: (A persistent Version IRI pointing to the Mondo version '2021-01-30')
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object_source:
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description: URI of vocabulary or identifier source for the object.
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range: EntityReference
@@ -528,13 +494,6 @@ slots:
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examples:
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- value: semapv:Stemming
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- value: semapv:StopWordRemoval
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literal_preprocessing:
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description: Method of preprocessing applied to the literal.
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range: EntityReference
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multivalued: true
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examples:
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- value: semapv:Stemming
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- value: semapv:StopWordRemoval
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curation_rule:
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description: A curation rule is a (potentially) complex condition executed by an agent that led to the establishment of a mapping.
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Curation rules often involve complex domain-specific considerations, which are hard to capture in an automated fashion. The curation
@@ -715,50 +674,6 @@ classes:
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- other
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- comment
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class_uri: owl:Axiom
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literal mapping:
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description: Represents an individual mapping between a literal and an entity.
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Note that this schema has been created on 01.08.2023 and is subject to change.
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see_also:
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- https://mapping-commons.github.io/sssom/sssom-profiles/
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slots:
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- literal
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- literal_datatype
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- predicate_id
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- predicate_label
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- predicate_modifier
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- object_id
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- object_label
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- object_category
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- mapping_justification
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- author_id
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- author_label
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- reviewer_id
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- reviewer_label
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- creator_id
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- creator_label
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- license
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- literal_source
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- literal_source_version
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- object_type
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- object_source
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- object_source_version
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- mapping_provider
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- mapping_source
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- mapping_cardinality
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- mapping_tool
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- mapping_tool_version
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- mapping_date
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- confidence
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- object_match_field
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- match_string
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- literal_preprocessing
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- object_preprocessing
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- similarity_score
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- similarity_measure
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- see_also
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- other
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- comment
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class_uri: owl:Axiom
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mapping registry:
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description: A registry for managing mapping sets. It holds a set of
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mapping set references, and can import other registries.

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