Skip to content

Commit 12d2cd8

Browse files
author
Brian Ondov
committed
License file and headers
1 parent c1601b4 commit 12d2cd8

21 files changed

Lines changed: 155 additions & 8 deletions

‎LICENSE.txt‎

Lines changed: 44 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,44 @@
1+
PURPOSE
2+
3+
Harvest is a file format conversion tool for use with the Harvest tool
4+
suite (github.com/marbl/harvest). Harvest is implemented in C++ and
5+
uses Google Protocol Buffers for serialization.
6+
7+
COPYRIGHT LICENSE
8+
9+
Copyright © 2014, Battelle National Biodefense Institute (BNBI);
10+
all rights reserved. Authored by: Brian Ondov, Todd Treangen, and
11+
Adam Phillippy
12+
13+
This Software was prepared for the Department of Homeland Security
14+
(DHS) by the Battelle National Biodefense Institute, LLC (BNBI) as
15+
part of contract HSHQDC-07-C-00020 to manage and operate the National
16+
Biodefense Analysis and Countermeasures Center (NBACC), a Federally
17+
Funded Research and Development Center.
18+
19+
Redistribution and use in source and binary forms, with or without
20+
modification, are permitted provided that the following conditions are
21+
met:
22+
23+
1. Redistributions of source code must retain the above copyright
24+
notice, this list of conditions and the following disclaimer.
25+
26+
2. Redistributions in binary form must reproduce the above copyright
27+
notice, this list of conditions and the following disclaimer in the
28+
documentation and/or other materials provided with the distribution.
29+
30+
3. Neither the name of the copyright holder nor the names of its
31+
contributors may be used to endorse or promote products derived from
32+
this software without specific prior written permission.
33+
34+
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
35+
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
36+
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
37+
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
38+
HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
39+
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
40+
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
41+
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
42+
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
43+
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
44+
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

‎src/harvest/AnnotationList.cpp‎

Lines changed: 5 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,8 @@
1+
// Copyright © 2014, Battelle National Biodefense Institute (BNBI);
2+
// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and
3+
// Adam Phillippy
4+
//
5+
// See the LICENSE.txt file included with this software for license information.
16

27
#include "AnnotationList.h"
38
#include <fstream>

‎src/harvest/AnnotationList.h‎

Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,9 @@
1+
// Copyright © 2014, Battelle National Biodefense Institute (BNBI);
2+
// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and
3+
// Adam Phillippy
4+
//
5+
// See the LICENSE.txt file included with this software for license information.
6+
17
#ifndef AnnotationList_h
28
#define AnnotationList_h
39

‎src/harvest/HarvestIO.cpp‎

Lines changed: 5 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,8 @@
1-
1+
// Copyright © 2014, Battelle National Biodefense Institute (BNBI);
2+
// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and
3+
// Adam Phillippy
4+
//
5+
// See the LICENSE.txt file included with this software for license information.
26

37
#include "HarvestIO.h"
48

‎src/harvest/HarvestIO.h‎

Lines changed: 5 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,8 @@
1+
// Copyright © 2014, Battelle National Biodefense Institute (BNBI);
2+
// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and
3+
// Adam Phillippy
4+
//
5+
// See the LICENSE.txt file included with this software for license information.
16

27
#ifndef HarvestIO_h
38
#define HarvestIO_h

‎src/harvest/LcbList.cpp‎

Lines changed: 5 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,8 @@
1+
// Copyright © 2014, Battelle National Biodefense Institute (BNBI);
2+
// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and
3+
// Adam Phillippy
4+
//
5+
// See the LICENSE.txt file included with this software for license information.
16

27
#include "harvest/LcbList.h"
38
#include <iostream>

‎src/harvest/LcbList.h‎

Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,9 @@
1+
// Copyright © 2014, Battelle National Biodefense Institute (BNBI);
2+
// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and
3+
// Adam Phillippy
4+
//
5+
// See the LICENSE.txt file included with this software for license information.
6+
17
#ifndef LcbList_h
28
#define LcbList_h
39

‎src/harvest/PhylogenyTree.cpp‎

Lines changed: 5 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,8 @@
1+
// Copyright © 2014, Battelle National Biodefense Institute (BNBI);
2+
// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and
3+
// Adam Phillippy
4+
//
5+
// See the LICENSE.txt file included with this software for license information.
16

27
#include "PhylogenyTree.h"
38
#include <fstream>

‎src/harvest/PhylogenyTree.h‎

Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,9 @@
1+
// Copyright © 2014, Battelle National Biodefense Institute (BNBI);
2+
// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and
3+
// Adam Phillippy
4+
//
5+
// See the LICENSE.txt file included with this software for license information.
6+
17
#ifndef harvest_PhylogenyTree
28
#define harvest_PhylogenyTree
39

‎src/harvest/PhylogenyTreeNode.cpp‎

Lines changed: 5 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,8 @@
1+
// Copyright © 2014, Battelle National Biodefense Institute (BNBI);
2+
// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and
3+
// Adam Phillippy
4+
//
5+
// See the LICENSE.txt file included with this software for license information.
16

27
#include "PhylogenyTreeNode.h"
38

0 commit comments

Comments
 (0)