Merqury run completes but no output QV files generated

[zhaoguochun1122-commits]

Hi,

Thank you for developing and sharing Merqury – it is an excellent tool for assembly evaluation.

I am trying to run Merqury but after the script finishes, no output files are generated.

Here is my command:

$PATH/merqury.sh HiFi_out.meryl final_hap1.fa merqury_out

**The log shows the following messages:

Input complete. Writing results to 'HiFi_out.meryl', using 40 threads.
finishIteration()--

Finished counting.

Cleaning up.

Bye.
read: c

No haplotype dbs provided.
Running Merqury in non-trio mode...

asm1: final_hap1.fa
out : merqury_out

Get spectra-cn plots and QV stats**

I have checked the input files, HiFi_out.meryl, they exist. But I can not obtain the results of merqury_out.

Could you please advise how to fix this issue so that the output files (e.g., merqury_out.qv, merqury_out.completeness.stats) can be generated?

Thank you for your help!

[arangrhie]

Which version of meryl / merqury are you using? Seems odd that no error messages are shown.