Skip to content

meryl count assertion failed with large K #44

@Dmitry-Antipov

Description

@Dmitry-Antipov

Tried to run with relatively large k (101), got this assertion

meryl count k=101 compress hifi.fasta.gz output 101.hpc.meryl
<...>
Start counting with THREADED method.                                                                                                                                                            
meryl: meryl/merylCountArray.C:512: uint64 merylCountArray::add(kmdata): Assertion `wordEnd <= 192' failed.                                                                                     

k=71 seems to work

would be nice to have max allowed k somewhere in usage/docs.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions