Automated dependency upgrades (#1938)

* update dependencies for mpcontribs-api (ubuntu-latest/py3.11)

* update dependencies for mpcontribs-api (ubuntu-latest/py3.12)

* update dependencies for mpcontribs-client (ubuntu-latest/py3.11)

* update dependencies for mpcontribs-client (ubuntu-latest/py3.12)

* update dependencies for mpcontribs-kernel-gateway (ubuntu-latest/py3.11)

* update dependencies for mpcontribs-kernel-gateway (ubuntu-latest/py3.12)

* update dependencies for mpcontribs-portal (ubuntu-latest/py3.11)

* update dependencies for mpcontribs-portal (ubuntu-latest/py3.12)

---------

Co-authored-by: github-actions <github-actions@github.com>

Author: tschaume

mpcontribs-api/requirements/ubuntu-latest_py3.11.txt

@@ -36,15 +36,15 @@ blinker==1.9.0
     # via mpcontribs-api (setup.py)
 boltons==25.0.0
     # via mpcontribs-api (setup.py)
-boto3==1.40.18
+boto3==1.40.24
     # via flask-mongorest-mpcontribs
-botocore==1.40.18
+botocore==1.40.24
     # via
     #   boto3
     #   s3transfer
 brotli==1.1.0
     # via flask-compress
-bytecode==0.16.2
+bytecode==0.17.0
     # via ddtrace
 certifi==2025.8.3
     # via requests
@@ -68,15 +68,15 @@ croniter==6.0.0
     # via rq
 crontab==1.0.5
     # via rq-scheduler
-cryptography==45.0.6
+cryptography==45.0.7
     # via pyopenssl
 css-html-js-minify==2.5.5
     # via mpcontribs-api (setup.py)
 cycler==0.12.1
     # via matplotlib
 dateparser==1.2.2
     # via mpcontribs-api (setup.py)
-ddtrace==3.12.2
+ddtrace==3.13.0
     # via mpcontribs-api (setup.py)
 debugpy==1.8.16
     # via ipykernel
@@ -92,7 +92,7 @@ entrypoints==0.4
     # via jupyter-client
 envier==0.6.1
     # via ddtrace
-executing==2.2.0
+executing==2.2.1
     # via stack-data
 fastjsonschema==2.21.2
     # via nbformat
@@ -128,13 +128,13 @@ flexcache==0.3
     # via pint
 flexparser==0.4
     # via pint
-fonttools==4.59.1
+fonttools==4.59.2
     # via matplotlib
 fqdn==1.5.1
     # via jsonschema
 freezegun==1.5.5
     # via rq-scheduler
-gevent==25.5.1
+gevent==25.8.2
     # via gunicorn
 greenlet==3.2.4
     # via gevent
@@ -151,7 +151,7 @@ ipykernel==6.29.5
     # via
     #   nbclassic
     #   notebook
-ipython==9.4.0
+ipython==9.5.0
     # via ipykernel
 ipython-genutils==0.2.0
     # via
@@ -176,7 +176,7 @@ jmespath==1.0.1
     # via
     #   boto3
     #   botocore
-joblib==1.5.1
+joblib==1.5.2
     # via pymatgen
 json2html==1.3.0
     # via mpcontribs-api (setup.py)
@@ -228,15 +228,15 @@ marshmallow==3.26.1
     #   mpcontribs-api (setup.py)
 marshmallow-mongoengine==0.31.2
     # via flask-mongorest-mpcontribs
-matplotlib==3.10.5
+matplotlib==3.10.6
     # via pymatgen
 matplotlib-inline==0.1.7
     # via
     #   ipykernel
     #   ipython
 mimerender-pr36==0.0.2
     # via flask-mongorest-mpcontribs
-mistune==3.1.3
+mistune==3.1.4
     # via
     #   flasgger-tschaume
     #   nbconvert
@@ -247,13 +247,13 @@ mongoengine==0.29.1
     #   marshmallow-mongoengine
 monty==2025.3.3
     # via pymatgen
-more-itertools==10.7.0
+more-itertools==10.8.0
     # via mpcontribs-api (setup.py)
 mpmath==1.3.0
     # via sympy
-narwhals==2.2.0
+narwhals==2.3.0
     # via plotly
-nbclassic==1.3.1
+nbclassic==1.3.2
     # via notebook
 nbclient==0.10.2
     # via nbconvert
@@ -332,7 +332,7 @@ prometheus-client==0.22.1
     # via
     #   jupyter-server
     #   notebook
-prompt-toolkit==3.0.51
+prompt-toolkit==3.0.52
     # via ipython
 protobuf==6.32.0
     # via ddtrace
@@ -410,7 +410,7 @@ referencing==0.36.2
     #   jsonschema
     #   jsonschema-specifications
     #   jupyter-events
-regex==2025.7.34
+regex==2025.9.1
     # via dateparser
 requests==2.32.5
     # via
@@ -426,7 +426,7 @@ rfc3986-validator==0.1.1
     #   jupyter-events
 rfc3987-syntax==1.1.0
     # via jsonschema
-rpds-py==0.27.0
+rpds-py==0.27.1
     # via
     #   jsonschema
     #   referencing
@@ -463,7 +463,7 @@ six==1.17.0
     #   rfc3339-validator
 sniffio==1.3.1
     # via anyio
-soupsieve==2.7
+soupsieve==2.8
     # via beautifulsoup4
 spglib==2.6.0
     # via pymatgen

mpcontribs-api/requirements/ubuntu-latest_py3.11_extras.txt

@@ -36,15 +36,15 @@ blinker==1.9.0
     # via mpcontribs-api (setup.py)
 boltons==25.0.0
     # via mpcontribs-api (setup.py)
-boto3==1.40.18
+boto3==1.40.24
     # via flask-mongorest-mpcontribs
-botocore==1.40.18
+botocore==1.40.24
     # via
     #   boto3
     #   s3transfer
 brotli==1.1.0
     # via flask-compress
-bytecode==0.16.2
+bytecode==0.17.0
     # via ddtrace
 certifi==2025.8.3
     # via requests
@@ -68,15 +68,15 @@ croniter==6.0.0
     # via rq
 crontab==1.0.5
     # via rq-scheduler
-cryptography==45.0.6
+cryptography==45.0.7
     # via pyopenssl
 css-html-js-minify==2.5.5
     # via mpcontribs-api (setup.py)
 cycler==0.12.1
     # via matplotlib
 dateparser==1.2.2
     # via mpcontribs-api (setup.py)
-ddtrace==3.12.2
+ddtrace==3.13.0
     # via mpcontribs-api (setup.py)
 debugpy==1.8.16
     # via ipykernel
@@ -92,7 +92,7 @@ entrypoints==0.4
     # via jupyter-client
 envier==0.6.1
     # via ddtrace
-executing==2.2.0
+executing==2.2.1
     # via stack-data
 fastjsonschema==2.21.2
     # via nbformat
@@ -130,13 +130,13 @@ flexcache==0.3
     # via pint
 flexparser==0.4
     # via pint
-fonttools==4.59.1
+fonttools==4.59.2
     # via matplotlib
 fqdn==1.5.1
     # via jsonschema
 freezegun==1.5.5
     # via rq-scheduler
-gevent==25.5.1
+gevent==25.8.2
     # via gunicorn
 greenlet==3.2.4
     # via gevent
@@ -155,7 +155,7 @@ ipykernel==6.29.5
     # via
     #   nbclassic
     #   notebook
-ipython==9.4.0
+ipython==9.5.0
     # via ipykernel
 ipython-genutils==0.2.0
     # via
@@ -180,7 +180,7 @@ jmespath==1.0.1
     # via
     #   boto3
     #   botocore
-joblib==1.5.1
+joblib==1.5.2
     # via pymatgen
 json2html==1.3.0
     # via mpcontribs-api (setup.py)
@@ -232,7 +232,7 @@ marshmallow==3.26.1
     #   mpcontribs-api (setup.py)
 marshmallow-mongoengine==0.31.2
     # via flask-mongorest-mpcontribs
-matplotlib==3.10.5
+matplotlib==3.10.6
     # via pymatgen
 matplotlib-inline==0.1.7
     # via
@@ -242,7 +242,7 @@ mccabe==0.7.0
     # via flake8
 mimerender-pr36==0.0.2
     # via flask-mongorest-mpcontribs
-mistune==3.1.3
+mistune==3.1.4
     # via
     #   flasgger-tschaume
     #   nbconvert
@@ -253,13 +253,13 @@ mongoengine==0.29.1
     #   marshmallow-mongoengine
 monty==2025.3.3
     # via pymatgen
-more-itertools==10.7.0
+more-itertools==10.8.0
     # via mpcontribs-api (setup.py)
 mpmath==1.3.0
     # via sympy
-narwhals==2.2.0
+narwhals==2.3.0
     # via plotly
-nbclassic==1.3.1
+nbclassic==1.3.2
     # via notebook
 nbclient==0.10.2
     # via nbconvert
@@ -341,7 +341,7 @@ prometheus-client==0.22.1
     # via
     #   jupyter-server
     #   notebook
-prompt-toolkit==3.0.51
+prompt-toolkit==3.0.52
     # via ipython
 protobuf==6.32.0
     # via ddtrace
@@ -379,7 +379,7 @@ pyparsing==3.2.3
     # via
     #   bibtexparser
     #   matplotlib
-pytest==8.4.1
+pytest==8.4.2
     # via mpcontribs-api (setup.py)
 python-dateutil==2.9.0.post0
     # via
@@ -426,7 +426,7 @@ referencing==0.36.2
     #   jsonschema
     #   jsonschema-specifications
     #   jupyter-events
-regex==2025.7.34
+regex==2025.9.1
     # via dateparser
 requests==2.32.5
     # via
@@ -442,7 +442,7 @@ rfc3986-validator==0.1.1
     #   jupyter-events
 rfc3987-syntax==1.1.0
     # via jsonschema
-rpds-py==0.27.0
+rpds-py==0.27.1
     # via
     #   jsonschema
     #   referencing
@@ -479,7 +479,7 @@ six==1.17.0
     #   rfc3339-validator
 sniffio==1.3.1
     # via anyio
-soupsieve==2.7
+soupsieve==2.8
     # via beautifulsoup4
 spglib==2.6.0
     # via pymatgen