upgrade dependencies for deployment

Author: github-actions

mpcontribs-api/requirements/deployment.txt

@@ -28,15 +28,17 @@ attrs==25.3.0
     #   referencing
 beautifulsoup4==4.13.4
     # via nbconvert
+bibtexparser==1.4.3
+    # via pymatgen
 bleach[css]==6.2.0
     # via nbconvert
 blinker==1.9.0
     # via mpcontribs-api (MPContribs/mpcontribs-api/setup.py)
 boltons==25.0.0
     # via mpcontribs-api (MPContribs/mpcontribs-api/setup.py)
-boto3==1.37.36
+boto3==1.37.37
     # via flask-mongorest-mpcontribs
-botocore==1.37.36
+botocore==1.37.37
     # via
     #   boto3
     #   s3transfer
@@ -212,8 +214,6 @@ jupyterlab-pygments==0.3.0
     # via nbconvert
 kiwisolver==1.4.8
     # via matplotlib
-latexcodec==3.0.0
-    # via pybtex
 markupsafe==3.0.2
     # via
     #   jinja2
@@ -297,7 +297,7 @@ orjson==3.10.16
     # via flask-mongorest-mpcontribs
 overrides==7.7.0
     # via jupyter-server
-packaging==24.2
+packaging==25.0
     # via
     #   gunicorn
     #   ipykernel
@@ -347,16 +347,14 @@ ptyprocess==0.7.0
     #   terminado
 pure-eval==0.2.3
     # via stack-data
-pybtex==0.24.0
-    # via pymatgen
 pycparser==2.22
     # via cffi
 pygments==2.19.1
     # via
     #   ipython
     #   ipython-pygments-lexers
     #   nbconvert
-pymatgen==2025.4.17
+pymatgen==2025.4.20
     # via mpcontribs-api (MPContribs/mpcontribs-api/setup.py)
 pymongo==4.12.0
     # via
@@ -365,7 +363,9 @@ pymongo==4.12.0
 pyopenssl==25.0.0
     # via mpcontribs-api (MPContribs/mpcontribs-api/setup.py)
 pyparsing==3.2.3
-    # via matplotlib
+    # via
+    #   bibtexparser
+    #   matplotlib
 python-dateutil==2.9.0.post0
     # via
     #   arrow
@@ -391,7 +391,6 @@ pyyaml==6.0.2
     # via
     #   flasgger-tschaume
     #   jupyter-events
-    #   pybtex
 pyzmq==26.4.0
     # via
     #   ipykernel
@@ -457,12 +456,11 @@ six==1.17.0
     #   flasgger-tschaume
     #   flask-sse
     #   flatten-dict
-    #   pybtex
     #   python-dateutil
     #   rfc3339-validator
 sniffio==1.3.1
     # via anyio
-soupsieve==2.6
+soupsieve==2.7
     # via beautifulsoup4
 spglib==2.6.0
     # via pymatgen

mpcontribs-client/requirements/deployment.txt

@@ -12,6 +12,8 @@ attrs==25.3.0
     # via
     #   jsonschema
     #   referencing
+bibtexparser==1.4.3
+    # via pymatgen
 boltons==25.0.0
     # via mpcontribs-client (MPContribs/mpcontribs-client/setup.py)
 bravado==11.1.0
@@ -78,8 +80,6 @@ jsonschema-specifications==2024.10.1
     # via jsonschema
 kiwisolver==1.4.8
     # via matplotlib
-latexcodec==3.0.0
-    # via pybtex
 matplotlib==3.10.1
     # via
     #   -r python/requirements.txt
@@ -111,7 +111,7 @@ numpy==1.26.4
     #   pymatgen
     #   scipy
     #   spglib
-packaging==24.2
+packaging==25.0
     # via
     #   matplotlib
     #   plotly
@@ -142,20 +142,20 @@ ptyprocess==0.7.0
     # via pexpect
 pure-eval==0.2.3
     # via stack-data
-pybtex==0.24.0
-    # via pymatgen
 pygments==2.19.1
     # via
     #   ipython
     #   ipython-pygments-lexers
 pyisemail==2.0.1
     # via mpcontribs-client (MPContribs/mpcontribs-client/setup.py)
-pymatgen==2025.4.17
+pymatgen==2025.4.20
     # via mpcontribs-client (MPContribs/mpcontribs-client/setup.py)
 pymongo==4.12.0
     # via mpcontribs-client (MPContribs/mpcontribs-client/setup.py)
 pyparsing==3.2.3
-    # via matplotlib
+    # via
+    #   bibtexparser
+    #   matplotlib
 python-dateutil==2.9.0.post0
     # via
     #   arrow
@@ -171,7 +171,6 @@ pyyaml==6.0.2
     # via
     #   bravado
     #   bravado-core
-    #   pybtex
     #   swagger-spec-validator
 referencing==0.36.2
     # via
@@ -214,7 +213,6 @@ six==1.17.0
     #   bravado
     #   bravado-core
     #   flatten-dict
-    #   pybtex
     #   python-dateutil
     #   rfc3339-validator
 spglib==2.6.0

mpcontribs-kernel-gateway/requirements/deployment.txt

@@ -20,6 +20,8 @@ attrs==25.3.0
     #   referencing
 beautifulsoup4==4.13.4
     # via nbconvert
+bibtexparser==1.4.3
+    # via pymatgen
 bleach[css]==6.2.0
     # via nbconvert
 blinker==1.9.0
@@ -156,8 +158,6 @@ kaleido==0.2.1
     # via -r MPContribs/mpcontribs-kernel-gateway/requirements.in
 kiwisolver==1.4.8
     # via matplotlib
-latexcodec==3.0.0
-    # via pybtex
 markupsafe==3.0.2
     # via
     #   jinja2
@@ -214,7 +214,7 @@ opentelemetry-api==1.32.1
     # via ddtrace
 overrides==7.7.0
     # via jupyter-server
-packaging==24.2
+packaging==25.0
     # via
     #   ipykernel
     #   jupyter-events
@@ -263,8 +263,6 @@ ptyprocess==0.7.0
     #   terminado
 pure-eval==0.2.3
     # via stack-data
-pybtex==0.24.0
-    # via pymatgen
 pycparser==2.22
     # via cffi
 pygments==2.19.1
@@ -274,12 +272,14 @@ pygments==2.19.1
     #   nbconvert
 pyisemail==2.0.1
     # via mpcontribs-client
-pymatgen==2025.4.17
+pymatgen==2025.4.20
     # via mpcontribs-client
 pymongo==4.12.0
     # via mpcontribs-client
 pyparsing==3.2.3
-    # via matplotlib
+    # via
+    #   bibtexparser
+    #   matplotlib
 python-dateutil==2.9.0.post0
     # via
     #   arrow
@@ -299,7 +299,6 @@ pyyaml==6.0.2
     #   bravado
     #   bravado-core
     #   jupyter-events
-    #   pybtex
     #   swagger-spec-validator
 pyzmq==26.4.0
     # via
@@ -355,12 +354,11 @@ six==1.17.0
     #   bravado
     #   bravado-core
     #   flatten-dict
-    #   pybtex
     #   python-dateutil
     #   rfc3339-validator
 sniffio==1.3.1
     # via anyio
-soupsieve==2.6
+soupsieve==2.7
     # via beautifulsoup4
 spglib==2.6.0
     # via pymatgen

mpcontribs-portal/requirements/deployment.txt

@@ -16,15 +16,17 @@ attrs==25.3.0
     #   referencing
 beautifulsoup4==4.13.4
     # via nbconvert
+bibtexparser==1.4.3
+    # via pymatgen
 bleach[css]==6.2.0
     # via nbconvert
 boltons==25.0.0
     # via
     #   mpcontribs-client
     #   mpcontribs-portal (MPContribs/mpcontribs-portal/setup.py)
-boto3==1.37.36
+boto3==1.37.37
     # via mpcontribs-portal (MPContribs/mpcontribs-portal/setup.py)
-botocore==1.37.36
+botocore==1.37.37
     # via
     #   boto3
     #   s3transfer
@@ -159,8 +161,6 @@ jupyterlab-pygments==0.3.0
     # via nbconvert
 kiwisolver==1.4.8
     # via matplotlib
-latexcodec==3.0.0
-    # via pybtex
 markupsafe==3.0.2
     # via
     #   jinja2
@@ -217,7 +217,7 @@ numpy==1.26.4
     #   spglib
 opentelemetry-api==1.32.1
     # via ddtrace
-packaging==24.2
+packaging==25.0
     # via
     #   gunicorn
     #   ipykernel
@@ -259,21 +259,21 @@ ptyprocess==0.7.0
     # via pexpect
 pure-eval==0.2.3
     # via stack-data
-pybtex==0.24.0
-    # via pymatgen
 pygments==2.19.1
     # via
     #   ipython
     #   ipython-pygments-lexers
     #   nbconvert
 pyisemail==2.0.1
     # via mpcontribs-client
-pymatgen==2025.4.17
+pymatgen==2025.4.20
     # via mpcontribs-client
 pymongo==4.12.0
     # via mpcontribs-client
 pyparsing==3.2.3
-    # via matplotlib
+    # via
+    #   bibtexparser
+    #   matplotlib
 python-dateutil==2.9.0.post0
     # via
     #   arrow
@@ -292,7 +292,6 @@ pyyaml==6.0.2
     # via
     #   bravado
     #   bravado-core
-    #   pybtex
     #   swagger-spec-validator
 pyzmq==26.4.0
     # via
@@ -346,10 +345,9 @@ six==1.17.0
     #   bravado
     #   bravado-core
     #   flatten-dict
-    #   pybtex
     #   python-dateutil
     #   rfc3339-validator
-soupsieve==2.6
+soupsieve==2.7
     # via beautifulsoup4
 spglib==2.6.0
     # via pymatgen