setup.py

from setuptools import setup, find_packages
import io
import os

# Read the contents of your README file
current_directory = os.path.abspath(os.path.dirname(__file__))
with io.open(os.path.join(current_directory, 'README.md'), encoding='utf-8') as f:
    long_description = f.read()

setup(name='fiveULTRA',
        description='5ULTRA: A Pipeline for 5UTR Variant Annotation and Scoring',
        long_description=long_description,
        long_description_content_type='text/markdown',
        author='Matthieu Chaldebas',
        author_email='mchaldebas@rockefeller.edu',
        license='CC BY-NC-ND 4.0',
        url='https://github.com/mchaldebas/5ULTRA',
        packages=find_packages(),
        install_requires=['pysam>=0.22.1',
                            'pandas>=1.4.4',
                            'numpy>=2.0',
                            'joblib>=1.1.0',
                            'scikit-learn==1.6.1',
	                    'requests',
                            'tqdm',
			    'gdown'
        ],
        entry_points={'console_scripts': [
                        '5ULTRA=fiveULTRA.__main__:main',
                        '5ULTRA-download-data=fiveULTRA.download_data:main',
                        ],
        },
        classifiers=['Programming Language :: Python :: 3',
                    'License :: Other/Proprietary License',
                    'Operating System :: OS Independent',
                    ],
        python_requires='>=2.1.0',
        test_suite='tests',
        )