update msigdb info

Author: Vanessa104

R/db_msig.R

@@ -101,19 +101,24 @@ msigdb_info <- function() {
     cat("| C1                       | Positional                            |\n")
     cat("| C2 CGP                   | Chemical and Genetic Perturbations    |\n")
     cat("| C2 CP                    | Canonical Pathways                    |\n")
-    cat("| C2 CP:BIOCARTA           | Canonical BIOCARTA                    |\n")
-    cat("| C2 CP:KEGG               | Canonical KEGG                        |\n")
+    cat("| C2 CP:BIOCARTA           | BioCarta Pathways                     |\n")
+    cat("| C2 CP:KEGG_LEGACY        | KEGG Legacy Pathways                  |\n")
+    cat("| C2 CP:KEGG_MEDICUS       | KEGG Medicus Pathways                 |\n")
     cat("| C2 CP:PID                | Canonical PID                         |\n")
     cat("| C2 CP:REACTOME           | Canonical REACTOME                    |\n")
-    cat("| C3 MIR                   | Motif miRNA Targets                   |\n")
-    cat("| C3 TFT                   | Motif Transcription Factor Targets    |\n")
+    cat("| C3 MIR:MIRDB             | miRDB                                 |\n")
+    cat("| C3 TFT:GTRD              | GTRD                                  |\n")
+    cat("| C3 TFT:TFT_LEGACY        | TFT_Legacy                            |\n")
     cat("| C4 CGN                   | Cancer Gene Neighborhoods             |\n")
     cat("| C4 CM                    | Cancer Modules                        |\n")
-    cat("| C5 BP                    | GO Biological Process                 |\n")
-    cat("| C5 CC                    | GO Cellular Component                 |\n")
-    cat("| C5 MF                    | GO Molecular Function                 |\n")
+    cat("| C5 GO:BP                 | GO Biological Process                 |\n")
+    cat("| C5 GO:CC                 | GO Cellular Component                 |\n")
+    cat("| C5 GO:MF                 | GO Molecular Function                 |\n")
+    cat("| C5 HPO                   | Human Phenotype Ontology              |\n")
     cat("| C6                       | Oncogenic Signatures                  |\n")
-    cat("| C7                       | Immunologic Signatures                |\n")
+    cat("| C7 IMMUNESIGDB           | ImmuneSigDB                           |\n")
+    cat("| C7 VAX                   | HIPC Vaccine Response                 |\n")
+    cat("| C8                       | Cell Type Signature                   |\n")
     cat("| H                        | Hallmark                              |\n")
     cat("|------------------------------------------------------------------|\n")
     cat("| Source: http://software.broadinstitute.org/gsea/msigdb           |\n")