This page is a compact index of the public API. Full docstrings are grouped by topic on the diversity, dissimilarity, and framework pages.
DiversityIndex
AlphaDiversityIndex
PairwiseIndex
counts
community_matrix
proportions
Validated
validate
alpha_diversity
ShannonEstimatorPluginMillerMadowHausserStrimmerBasharinAddGammaChaoShenRichnessShannonRenyiTsallisSimpsonGiniSimpsonGreenbergDiversityIndexLinguisticDiversityIndexInverseSimpsonHillChao1ACESampleCoveragePielouEvennessFisherAlpha
entropyentropy_varianceentropy_confintdiversityeffective_diversityalpha_diversityrichnessshannonshannon_entropyshannon_varianceshannon_confintshannon_diversitybootstrapjackkniferenyirenyi_entropyrenyi_diversitytsallistsallis_entropytsallis_diversityhill_numberchao1acesample_coveragepielou_evennessfisher_alphasimpson_indexgini_simpson_indexgreenberg_diversity_indexlinguistic_diversity_indexindex_of_linguistic_diversityinverse_simpson_index
JaccardSorensenDiceOverlapBrayCurtisRuzickaTotalVariationManhattanEuclideanCanberraHellingerChordBhattacharyyaKullbackLeiblerShannonDifferenceJensenDifferenceJensenShannonMorisitaHorn
similaritydissimilaritydistancelabeled_similaritylabeled_dissimilaritylabeled_distancejaccard_similarityjaccard_indexjaccard_distancesorensen_indexsorensen_dice_indexsorensen_distancesorensen_dice_distancesorensen_dice_dissimilaritybray_curtis_distancebray_curtis_dissimilarityoverlap_similarityoverlap_distanceruzicka_similarityquantitative_jaccard_similarityruzicka_distancequantitative_jaccard_distancetotal_variation_distancemanhattan_distanceeuclidean_distancecanberra_distancehellinger_distancechord_distancebhattacharyya_coefficientbhattacharyya_distancekullback_leibler_divergenceshannon_differencejensen_differencejensen_shannon_similarityjensen_shannon_divergencejensen_shannon_distancemorisita_horn_similaritymorisita_horn_distance
index_metadataindex_familyinput_modeoutput_modeis_finiteis_metricis_triangularis_nonnegativeis_boundedis_pseudometricis_quasimetricis_metametricis_semimetricis_premetricis_supermetricis_similarityis_dissimilarityis_dissimiliartyindex_rangeindex_boundsrequires_probabilitiessupports_matrix_kernelreference_casesvalidate_reference_casesestimator_reportdiversity_audituncertainty_audit