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Validate reference params & simplify channels #4

	name: nf-core linting
	on:
	push:
	branches: [main, dev, "nf-core/**"]
	pull_request:
	branches: [main, dev]

	concurrency:
	group: "${{ github.workflow }}-${{ github.event.pull_request.number \|\| github.ref }}"
	cancel-in-progress: true

	jobs:
	pre-commit:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	- uses: pre-commit/action@v3.0.1

	prettier:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: creyD/prettier_action@v4.3
	with:
	prettier_options: --check .

	nf-core-lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Install Nextflow
	uses: nf-core/setup-nextflow@v2
	- uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	- name: Install nf-core tools
	run: pip install nf-core
	- name: Run nf-core lint
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	run: nf-core -l lint_log.txt pipelines lint --dir . --fail-warned
	- name: Upload lint log
	if: always()
	uses: actions/upload-artifact@v4
	with:
	name: lint-log
	path: lint_log.txt