tempo/.github/workflows/nf-test.yml at 4d4f4a2a215a405584571ea71d1aa9df09e1babd · mskcc/tempo · GitHub

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name: nf-test
on:
  push:
    branches: [main, dev, 'nf-core/**']
  pull_request:
    branches: [main, dev]
  workflow_dispatch:

concurrency:
  group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}"
  cancel-in-progress: true

jobs:
  changes:
    name: Check changes
    runs-on: ubuntu-latest
    outputs:
      nf_test_files: ${{ steps.list.outputs.components }}
      has_changes: ${{ steps.list.outputs.has_changes }}
    steps:
      - uses: actions/checkout@v4
      - name: List nf-test files
        id: list
        uses: ./.github/actions/get-shards

  test:
    name: "Test ${{ matrix.shard }}"
    needs: changes
    if: needs.changes.outputs.has_changes == 'true'
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        shard: ${{ fromJson(needs.changes.outputs.nf_test_files) }}
        profile: [docker]
        NXF_VER:
          - "24.04.2"
          - "latest-everything"
    steps:
      - uses: actions/checkout@v4
      - uses: ./.github/actions/nf-test
        with:
          shard: ${{ matrix.shard }}
          profile: ${{ matrix.profile }}
          nextflow_version: ${{ matrix.NXF_VER }}

  confirm:
    name: nf-test-success
    if: always()
    needs: [changes, test]
    runs-on: ubuntu-latest
    steps:
      - name: All tests passed
        if: needs.test.result == 'success' || needs.changes.outputs.has_changes != 'true'
        run: echo "All tests passed"
      - name: Some tests failed
        if: needs.test.result != 'success' && needs.changes.outputs.has_changes == 'true'
        run: exit 1